PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G152800.1 | ||||||||
Common Name | PHAVU_005G152800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | FAR1 | ||||||||
Protein Properties | Length: 255aa MW: 29362 Da PI: 6.3588 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.8 | 6.8e-27 | 77 | 167 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ +++++ + + tr gC+a++++ +++ gkw+vtk+++eHnH+l Phvul.005G152800.1 77 EFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPATREGCQAMIRLALRDGGKWVVTKFVKEHNHKL 166 6******************************************99883333.2448899*******************************9 PP FAR1 90 a 90 + Phvul.005G152800.1 167 M 167 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.3E-24 | 77 | 167 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MDHESGQGFD SDDSELDMQA EISEKHGKID EFSKNLELCG SEDEKFVELP ATEISTDIEA 60 VEPFIGMEFN SREEAREFYI AYGRRIGFTV RIHHNRRSRV NNQVIGQDFV CSKEGFRAKK 120 YVHRKDRVLP PPPATREGCQ AMIRLALRDG GKWVVTKFVK EHNHKLMSPS KVPWRGSGKH 180 LVSEDEKDKR IRELSLELYN ERQKCKRRCA AYEEQLNMIL NDLEKHTEHI SEKVAAVVRS 240 IREIEEEKSD SDGG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G152800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007150429.1 | 0.0 | hypothetical protein PHAVU_005G152800g | ||||
TrEMBL | V7BZ97 | 0.0 | V7BZ97_PHAVU; Uncharacterized protein | ||||
STRING | XP_007150429.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 1e-44 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G152800.1 |
Entrez Gene | 18631171 |