PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.005G148600.1 | ||||||||
Common Name | PHAVU_005G148600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 337aa MW: 37840.6 Da PI: 8.0093 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.9 | 7.8e-05 | 169 | 188 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Phvul.005G148600.1 169 FSCPLCFKTFNRYNNMQMHM 188 89*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.66 | 169 | 196 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.8E-5 | 169 | 188 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 171 | 191 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.22E-5 | 235 | 273 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.2E-4 | 240 | 273 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 337 aa Download sequence Send to blast |
MTHPYCSNDF NAWFDLNSPF IFSSSSSPCS NNPPFYFPST YHHHNFPSGI SFTPHQSSPP 60 KEALPLLNLS PARGEDLESC FSVMKVNKEK EIELSMLSSN NSSLDDDETV TVALHLGLPS 120 TTTSSDLTSN TCSDKEKATV GSEYSPTRIN KGQYWIPTPA QILIGPTQFS CPLCFKTFNR 180 YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM LRLPCYCCAA GCKNNIDHPR AKPLKDFRTL 240 QTHYKRKHGI KPFMCRKCCK AFAVRGDWRT HEKNCGKLWY CSCGSDFKHK RSLKDHIKAF 300 GNGHKAYGID CLDQDDEPGS EIEQESVNES LVSIHS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.005G148600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT097140 | 0.0 | BT097140.1 Soybean clone JCVI-FLGm-21L15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007150382.1 | 0.0 | hypothetical protein PHAVU_005G148600g | ||||
Swissprot | Q9SVY1 | 1e-126 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | V7C0F2 | 0.0 | V7C0F2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007150382.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF170 | 34 | 289 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-125 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.005G148600.1 |
Entrez Gene | 18631129 |
Publications ? help Back to Top | |||
---|---|---|---|
|