PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G148600.1
Common NamePHAVU_005G148600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 337aa    MW: 37840.6 Da    PI: 8.0093
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G148600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.8e-05169188120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  Phvul.005G148600.1 169 FSCPLCFKTFNRYNNMQMHM 188
                         89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66169196IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.8E-5169188IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
SuperFamilySSF576673.22E-5235273No hitNo description
Gene3DG3DSA:3.30.160.605.2E-4240273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MTHPYCSNDF NAWFDLNSPF IFSSSSSPCS NNPPFYFPST YHHHNFPSGI SFTPHQSSPP  60
KEALPLLNLS PARGEDLESC FSVMKVNKEK EIELSMLSSN NSSLDDDETV TVALHLGLPS  120
TTTSSDLTSN TCSDKEKATV GSEYSPTRIN KGQYWIPTPA QILIGPTQFS CPLCFKTFNR  180
YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM LRLPCYCCAA GCKNNIDHPR AKPLKDFRTL  240
QTHYKRKHGI KPFMCRKCCK AFAVRGDWRT HEKNCGKLWY CSCGSDFKHK RSLKDHIKAF  300
GNGHKAYGID CLDQDDEPGS EIEQESVNES LVSIHS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G148600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0971400.0BT097140.1 Soybean clone JCVI-FLGm-21L15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150382.10.0hypothetical protein PHAVU_005G148600g
SwissprotQ9SVY11e-126ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLV7C0F20.0V7C0F2_PHAVU; Uncharacterized protein
STRINGXP_007150382.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-125C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]