PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G147500.1
Common NamePHAVU_005G147500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 305aa    MW: 34353.4 Da    PI: 5.8779
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G147500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49e-151663148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  Phvul.005G147500.1 16 KGLWSPEEDEKLMKYMVNSGQGCWSDVARNAGLQRCGKSCRLRWINYL 63
                        678*******************************************97 PP
2Myb_DNA-binding491.4e-1569112146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+++++E+el+++ +  lG++ W+ Ia++++ gRt++++k++w++
  Phvul.005G147500.1  69 RGAFSPQEEELIIHFHSFLGNR-WSQIAARLP-GRTDNEIKNFWNS 112
                         89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1051163IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-231166IPR009057Homeodomain-like
SuperFamilySSF466891.68E-2714110IPR009057Homeodomain-like
SMARTSM007172.0E-101565IPR001005SANT/Myb domain
PfamPF002493.2E-131663IPR001005SANT/Myb domain
CDDcd001671.92E-81963No hitNo description
PROSITE profilePS5129423.81864118IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-2567119IPR009057Homeodomain-like
SMARTSM007177.2E-1568116IPR001005SANT/Myb domain
PfamPF002493.3E-1469112IPR001005SANT/Myb domain
CDDcd001675.37E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MRKPEGCSGK ENKFRKGLWS PEEDEKLMKY MVNSGQGCWS DVARNAGLQR CGKSCRLRWI  60
NYLRPDLKRG AFSPQEEELI IHFHSFLGNR WSQIAARLPG RTDNEIKNFW NSTIKKRLKN  120
MSSATTGSTS TNASETSSEP CKDPKTGGFV PTQHHQHASY VHVFGSSPSQ SIQTTALNTM  180
IERLPMLDHG LNIGPWFSQS EVEKGCYLEN QVFGSVDIGV EGDMFDPPLE NLNTSINHNL  240
SKKETNSSYF DDLNSILNNC NIGITSENKE GVENLFQQEL ATAEWDFEEL MKDVSSFPFV  300
DFSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27161187108B-MYB
1h8a_C8e-271611827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G147500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-103AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150366.10.0hypothetical protein PHAVU_005G147500g
TrEMBLV7BZ780.0V7BZ78_PHAVU; Uncharacterized protein
STRINGXP_007150366.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-70myb domain protein 46