PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G145000.1
Common NamePHAVU_005G145000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 684aa    MW: 77454.8 Da    PI: 5.2736
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G145000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.96.1e-1093096801373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++lL++cA+av+s++ + a++l++++++++sp+gd+ qRla+yf +AL+a l +++ ++y+  ++++ s    ++ ++a++++  v+P+ 
  Phvul.005G145000.1 309 LRTLLIHCAQAVASDSPSFAKQLVKQIKQHSSPTGDTAQRLAHYFGNALEACLDGTGFHVYSVASSKRIS---AKDMIKAYHVYASVCPFE 396
                         6789***************************************************9999**988888887...99**************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                          ++ + aN+ I+  +e+++++HiiDf+i +G++Wp+L+ +++ Rp+gpp+lR Tg+++p++g   +e++ etg+rL++++++++vpfefn+
  Phvul.005G145000.1 397 MIAIMFANKSIYSLAENAKTIHIIDFGIRYGFKWPSLISEISRRPGGPPKLRFTGIDQPQPGfrPEERVLETGRRLENYCKRFNVPFEFNA 487
                         ******************************************************************************************* PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a++++++++e+L+++++E +aVn+++ql+rlldesv l+++rd vL+l+k+ +P+++v++  + +h+ + F+ rf eal +ysa+fd+l
  Phvul.005G145000.1 488 -IARKWDTIRIEDLKIEKNEFVAVNCMFQLERLLDESVVLDNPRDGVLRLIKKANPDIFVHSIVNGSHDVPFFVSRFREALFHYSAVFDML 577
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                         +++l re+  r + E+el+g+ei+n++aceg er+er +t+++W+   ++ GF+ +pl++k+ ++ k   r  + +  +++e + +++++g
  Phvul.005G145000.1 578 DSNLDREDPSRLMFEKELFGQEIMNIIACEGCERVERPQTYKQWQLHNMRIGFRLLPLNQKVIDKLKKRWRDDAyNTNFMLEVDGDWVLQG 668
                         *******************************************************************99999887999************* PP

                GRAS 362 WkdrpLvsvSaW 373
                         Wk+r L + S+W
  Phvul.005G145000.1 669 WKGRILHASSCW 680
                         ************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.619283660IPR005202Transcription factor GRAS
PfamPF035142.1E-106309680IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MDRRVSSTMN IANDEEESCF DEGDVSAVLD YIKQMLMEED TEEKYSMFHD SLALQYTERS  60
FYEVITHHNP SSSSSSSAHH HAHSCTSSSE ESSEQNVSGS SSDNSTGSST DNSTSISAES  120
QWRSVDHNTP ALPNTFTFPD NFVFPSNSTS TTQSSMNTVF GFLDNSLLDS AFQEHFKRGL  180
EQGTRFLPKH TPFIVDTDST AFSPSFTMVP SVVVKTEPEE SVEGDHFLSV SRRRNRDEEE  240
YEADGRITKT SAAYVDESEL SELLDKVVLG TGLGKGVPPD TALYQNDETL LTNMFGREVR  300
KSGEEVVDLR TLLIHCAQAV ASDSPSFAKQ LVKQIKQHSS PTGDTAQRLA HYFGNALEAC  360
LDGTGFHVYS VASSKRISAK DMIKAYHVYA SVCPFEMIAI MFANKSIYSL AENAKTIHII  420
DFGIRYGFKW PSLISEISRR PGGPPKLRFT GIDQPQPGFR PEERVLETGR RLENYCKRFN  480
VPFEFNAIAR KWDTIRIEDL KIEKNEFVAV NCMFQLERLL DESVVLDNPR DGVLRLIKKA  540
NPDIFVHSIV NGSHDVPFFV SRFREALFHY SAVFDMLDSN LDREDPSRLM FEKELFGQEI  600
MNIIACEGCE RVERPQTYKQ WQLHNMRIGF RLLPLNQKVI DKLKKRWRDD AYNTNFMLEV  660
DGDWVLQGWK GRILHASSCW IPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-493136808374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1640645DKLKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G145000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150337.10.0hypothetical protein PHAVU_005G145000g
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLV7C0B40.0V7C0B4_PHAVU; Uncharacterized protein
STRINGXP_007150337.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-180SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]