PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G138300.2
Common NamePHAVU_005G138300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 461aa    MW: 50748.4 Da    PI: 8.4483
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G138300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-17136185155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Phvul.005G138300.2 136 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 185
                         78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-9136185IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-16136193IPR016177DNA-binding domain
PROSITE profilePS5103217.82137193IPR001471AP2/ERF domain
CDDcd000182.01E-11137192No hitNo description
Gene3DG3DSA:3.30.730.104.8E-17137193IPR001471AP2/ERF domain
SMARTSM003801.8E-31137199IPR001471AP2/ERF domain
CDDcd000182.35E-13228273No hitNo description
SuperFamilySSF541712.09E-6228272IPR016177DNA-binding domain
SMARTSM003804.4E-13229277IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MLDLNLNADS TQSHDSVMLL DKFPEASSGT SNSSVVNAEG SSNEDSCSTR AGGVFTFNFG  60
ILKVEGAEDV VVAATKELFP VSADNWQGQS STSSFQARKS LMDLSLDRQN GEVKVVQVQQ  120
QSQVKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH AAARAYDRAA  180
IKFRGLDADI NFNLVDYEED LKQMKNLSKE EFVHILRRHS TGFSRGSSKY RGVTLHKCGR  240
WEARMGQFLG KKAYDKAAIK CNGREAVTNF EPSAYESEMK PEAINEGGSH DLDLNLGIAT  300
PGHGPKENLG HLQFQQVPYS THPGRISRME TNVNSVIGDP SLKRHAVTEE RPSEWNTSYS  360
TFFPNLERAE RIGIDPSKGV PNWAWQTHSQ VSATPVPPFS TAASSGFSIS ATFPPNAIFP  420
TKSLNSIPQN LCFTSASAPG SNAPQFYYEV KPLQTPSQPI *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G138300.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150247.10.0hypothetical protein PHAVU_005G138300g
SwissprotQ9SK031e-114RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLV7C0300.0V7C030_PHAVU; Uncharacterized protein
STRINGXP_007150248.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-110related to AP2.7