PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G136300.1
Common NamePHAVU_005G136300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 486aa    MW: 54133 Da    PI: 8.7458
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G136300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-056789123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C+ C+k F r  nL+ H r H
  Phvul.005G136300.1 67 FICEVCNKGFQRDQNLQLHRRGH 89
                        89*******************88 PP
2zf-C2H211.90.0007143165123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H + +
  Phvul.005G136300.1 143 WKCEKCSKKYAVQSDWKAHNKIC 165
                         58*****************8876 PP
3zf-C2H2110.0014173191523
                         TTTEEESSHHHHHHHHHHT CS
             zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                         dCg+ Fsrk+++++H   +
  Phvul.005G136300.1 173 DCGTIFSRKDSFVTHRAFC 191
                         9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.05E-76689No hitNo description
Gene3DG3DSA:3.30.160.608.2E-66689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.9E-56789IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8666789IPR007087Zinc finger, C2H2
SMARTSM003550.0266789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355180108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-4131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.05E-7138163No hitNo description
SMARTSM00355160143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MMSGEAITVP SNLGDSSVQV HDPNSNPNPN PNPNSSVKRK RSLPGTPDPN AEVIALSPKS  60
LMATNRFICE VCNKGFQRDQ NLQLHRRGHN LPWKLRQRTK EEVRKKVYVC PEKSCVHHDP  120
CRALGDLTGI KKHFSRKHGE KKWKCEKCSK KYAVQSDWKA HNKICGTRQY KCDCGTIFSR  180
KDSFVTHRAF CDAMVEQSTR LPAVLSNHLG NDILMNAQGP RVMPQGLQLH GFHSEFGGPG  240
PESYMGNFAD AEHVEHKLRL PLWLDQTNLQ LNHPLGVVPG NSSVFSPGAT LPETNNIFGT  300
SSSQAQWANY RYPEASFACA SVSMPHGLKL EQEDNKGELS HCVSSLYPSH MESTRMSGTS  360
PFDNSNFGLL DPNMSSTSTN NRSNVVEIQK LFKQGNQPEN LNLMVNSQAS RGGFSLSCRK  420
SLEHMVMPRI EEWGSGEAEI TEKQVRSSSN TEEHLTKDFM GVGDGSLSRQ MGPVMNLQRQ  480
FRGHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-34139208372Zinc finger protein JACKDAW
5b3h_F6e-34139208372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193105KLRQRTKEEVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G136300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150215.10.0hypothetical protein PHAVU_005G136300g
TrEMBLV7BW950.0V7BW95_PHAVU; Uncharacterized protein
STRINGXP_007150215.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-96C2H2-like zinc finger protein