PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G134500.2 | ||||||||
Common Name | PHAVU_005G134500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ARF | ||||||||
Protein Properties | Length: 668aa MW: 73515.2 Da PI: 7.6674 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.8 | 4.8e-24 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+lt+sd+++ g +++p+ +ae++ +++ + t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF Phvul.005G134500.2 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFL- 199 89****************************986445444..8************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++ l+v+++r+ Phvul.005G134500.2 200 -RAENGDLCVGIRRA 213 .4488999****997 PP | |||||||
2 | Auxin_resp | 113.7 | 1.7e-37 | 274 | 356 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 + a+++++Fe+vY+Pra t+eF+++++ v+ a++++++ GmRfkm fetedss++++ +Gt+++v+ ldp+rWpnS+Wr+L+ Phvul.005G134500.2 274 IALAANNQPFEIVYYPRANTPEFCIRTSAVRGAMRIQWCSGMRFKMPFETEDSSRISWfMGTIASVQVLDPIRWPNSPWRLLQ 356 67899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-38 | 104 | 215 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-29 | 107 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.62E-22 | 111 | 212 | No hit | No description |
Pfam | PF02362 | 2.4E-22 | 112 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.169 | 112 | 214 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-23 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.3E-32 | 274 | 356 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 11.549 | 585 | 666 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 668 aa Download sequence Send to blast |
MKETEKSLDP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH AQSNLDFGAS RIPIPPLVLC 60 RVAAVKFLAD PETDEVFARL RLVPLRNTEL DHEDGDNVDG NGAEGSEKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYSAEPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG 180 WSSFVNQKKL VAGDSIVFLR AENGDLCVGI RRAKRGGVGG PEAPCGWSSG GGGGGGLGIG 240 PYGAFSAFLR EESKVVRNGC GRPKVSGESV REAIALAANN QPFEIVYYPR ANTPEFCIRT 300 SAVRGAMRIQ WCSGMRFKMP FETEDSSRIS WFMGTIASVQ VLDPIRWPNS PWRLLQVTWD 360 EPDLLHNVKR VSPWLVELVS NVPVIHLAPF SPPRKKLRFP QHPEFPLDVQ FPIPTFSGNP 420 FGSSTSSPLC CLSDNAPAGI QGARHAQIGI TLSDLHLNNN KLQLGLLPTN VRQLDLHTGI 480 SNVNITNHGK SKESLSCLLT MGSSRKSLEK SDRVKRHQFL LFGQPILTEQ QISRSSGDVF 540 SQNCTATDDE NKEKKEKGFS DSQSSVSPGK SSSTTEFSWQ LGSDTSHCKV FMESEDVGRT 600 LDLSCLGSYD ELYMRLASMF GIERSEMLSH VLYRDATGAL KQTGEEPFRY QSISCSSVIS 660 YSLFVFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-82 | 8 | 377 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G134500.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007150195.1 | 0.0 | hypothetical protein PHAVU_005G134500g | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | V7BW76 | 0.0 | V7BW76_PHAVU; Auxin response factor | ||||
STRING | XP_007150194.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G134500.2 |
Entrez Gene | 18630986 |
Publications ? help Back to Top | |||
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