PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G132700.1
Common NamePHAVU_005G132700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 786aa    MW: 87224.5 Da    PI: 6.7731
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G132700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18.1e-105916281954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++ +LA+++gL+ +qV++WF N R +
  Phvul.005G132700.1 591 FEHflHPYPTDTDKHRLASQTGLSRNQVSNWFINARVR 628
                         665559******************************87 PP
2BELL98.36.1e-32446515372
                BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          + q+kkakLl ++eeV ++ kqy+ q+q+vissFe vagl sa+pY+s+Alk +S+hFrcLk+ i++q+
  Phvul.005G132700.1 446 PDYQQKKAKLLYMQEEVTRQCKQYHLQMQMVISSFESVAGLSSATPYISMALKSVSKHFRCLKNSISDQL 515
                         5789***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-38349513IPR006563POX domain
PfamPF075264.2E-38354512IPR006563POX domain
PROSITE profilePS5007112.244569632IPR001356Homeobox domain
CDDcd000867.00E-12572633No hitNo description
SMARTSM003891.9E-9572636IPR001356Homeobox domain
SuperFamilySSF466897.7E-17574638IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-27575636IPR009057Homeodomain-like
PfamPF059204.7E-18589628IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MDVLRPESHV AQQIRREKLR IQNSSQPLHE FPNNLEPLSL QPGFNNFDLL HVRNVRNANM  60
LDEPVVYSLE MPNFSTSLNP LSAPKNALEY HQEIGAAEPS NRLMMNQYGS FSHSMPAIHS  120
SHKEQCEIRN LGNWRNSAPQ QGSDWFVNYA SNANSFLPSE LNNVSSYNEL MDVQCSNASD  180
EISDREIQKQ LGVLHNPPPP PSPLYQNAFQ DIVKSTSISA HTRQDMTSLM QQNDHSIWVG  240
GASEVELQQP SYGNQSNPVR FGWTNRAIDN IPSDSLPQSL SLSLSSNAQP KPSVSQHEQG  300
STSEYPRCLK YMKSSIVSRD CAKSVQDTVG MPSKSTISYR SVGPLGPFTG YATILKSSRF  360
LRSVQQLLDE IFCLSGAKFA KSYDVSERVS PEVSASTSAD TVTVNETGVT AKGSNSGSSS  420
TMLYNLSKEN SADLGVGSSF DLSSRPDYQQ KKAKLLYMQE EVTRQCKQYH LQMQMVISSF  480
ESVAGLSSAT PYISMALKSV SKHFRCLKNS ISDQLKLISE ALGEDVSIPS TSTGSKADTT  540
MARIRCSMDQ SFLRNKSGKG TTDHLDPQQH VWRPQRGLPE RAVAILKAWL FEHFLHPYPT  600
DTDKHRLASQ TGLSRNQVSN WFINARVRVW KPMVEEIHML ETKATGTKEK SGRHEGTSSG  660
PEGDTSQPRV DMPLSNIGMN SIPENRFEGM EMESSNADES GLNEEQWSQE KRSKLECQMT  720
SNTMDGTLMG FVPYRRGGLE VGGLGSVSLT LGLRHGVEGV QHPQQLQEEQ LRHHLGGHMI  780
HDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15578636563Homeobox protein Meis2
3k2a_B2e-15578636563Homeobox protein Meis2
4xrm_A2e-15578636563Homeobox protein Meis2
4xrm_B2e-15578636563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G132700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150172.10.0hypothetical protein PHAVU_005G132700g
TrEMBLV7BZW70.0V7BZW7_PHAVU; Uncharacterized protein
STRINGXP_007150172.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-76BEL1-like homeodomain 8