PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G131300.1
Common NamePHAVU_005G131300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 338aa    MW: 38069.2 Da    PI: 7.3872
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G131300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl
  Phvul.005G131300.1 14 RGPWSPEEDSKLKEYIEKNGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding39.21.6e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ eEd ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Phvul.005G131300.1  69 GEFSDEEDRIICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.437962IPR017930Myb domain
SuperFamilySSF466898.98E-2711109IPR009057Homeodomain-like
SMARTSM007179.4E-121364IPR001005SANT/Myb domain
PfamPF002492.7E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-241569IPR009057Homeodomain-like
CDDcd001671.37E-81662No hitNo description
PROSITE profilePS5129422.46563117IPR017930Myb domain
SMARTSM007176.6E-1267115IPR001005SANT/Myb domain
PfamPF002493.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2470117IPR009057Homeodomain-like
CDDcd001673.84E-870113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDSKLKEYIE KNGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKRKLMGL  120
LPASHQRIAP YQHSSTQNPP SSFSSQSSLS SSIYRDYCNN SHYHIPAPTS SFPCLQQISV  180
PSSNYTSTTT SLPLYQNQEP LVSVSPMQYY PTTDSSMLVF GSETSCSSSD GSCSQVSLGR  240
EIKQEEMGFQ NLMFGDQNTN RFMQSQGNIN HDGGEEYVHQ WTEKPNGCFF QTQQTALDYD  300
LEVIKQLIST NSGSNYSNNG YFSIDENKTE KGVYYNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G131300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150152.10.0hypothetical protein PHAVU_005G131300g
TrEMBLV7BZV30.0V7BZV3_PHAVU; Uncharacterized protein
STRINGXP_007150152.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-76myb domain protein 36