PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G127600.1
Common NamePHAVU_005G127600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 297aa    MW: 31967.9 Da    PI: 4.551
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G127600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-05271293223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +C+ C+ksF++ s L++H +  H
  Phvul.005G127600.1 271 SCKSCSKSFNSDSGLQQHNKAkH 293
                         7*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.926270296IPR007087Zinc finger, C2H2
PROSITE patternPS000280272293IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEFWGAEVKV GESVKVDPTE FEACIHLSQA ALGEAKKEKP NEPVVVFLKV GEQKFVLGTL  60
SREKIPQISL ELVLEKEFEL SHSSKNATVH FCGYKAYYSG DDSEEDEFTD SDEDIPLVNT  120
ENGKPEKKSE EVKAVGSKKP DAKAAAPSKK VKVVEPEKDK EDSDDDSDED EAFGISDEEM  180
DDADSDDSDE ESGSDEDDDE ETPPPKKADL GKKRPNESAS KTPVSSKKAK NATPEKNDGK  240
KTGNVGTPHS AKKGGKTPNS EAKSPKSGGL SCKSCSKSFN SDSGLQQHNK AKHGGQ*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G127600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150109.10.0hypothetical protein PHAVU_005G127600g
SwissprotQ8LJS25e-94HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLV7BYF50.0V7BYF5_PHAVU; Uncharacterized protein
STRINGXP_007150109.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-26histone deacetylase 2C