PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G126600.1
Common NamePHAVU_005G126600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 228aa    MW: 25694.3 Da    PI: 10.0845
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G126600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-1663111255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr++k  g+Wv+e+r+p++   ++r++lg++ t+e+Aa+a++  +++++g
  Phvul.005G126600.1  63 IYRGVRQRK--GKWVCELREPKK---TTRIWLGTYPTPEMAARAHDVGALAIRG 111
                         69***9987..*********853...5********************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.40E-2962121No hitNo description
PfamPF008478.0E-1262111IPR001471AP2/ERF domain
PROSITE profilePS5103220.13963119IPR001471AP2/ERF domain
SMARTSM003802.3E-2863125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2763121IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-1863121IPR016177DNA-binding domain
PRINTSPR003674.9E-56475IPR001471AP2/ERF domain
PRINTSPR003674.9E-585101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MNFEIESPFS FQSSSTISQS PPCTTLNNTN PHPLSHPLLH AQFVVSHKRK DGRKKFKETR  60
HPIYRGVRQR KGKWVCELRE PKKTTRIWLG TYPTPEMAAR AHDVGALAIR GNSAILNFPN  120
SASLLPIVTS SSPKDIRAAA VKAAESFRPI MLSSFSTSHH KKTSRKANGK EKNNFDLSST  180
MFFDEEALFN MPGLLDRMAE SLCLFPLPSI VDWDDHAYFT EFNLWTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-14611281281Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G126600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-175AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150099.11e-170hypothetical protein PHAVU_005G126600g
SwissprotA2WZI45e-52DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z55e-52DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLV7BYE41e-168V7BYE4_PHAVU; Uncharacterized protein
STRINGXP_007150099.11e-169(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1826166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.11e-47C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]