PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G124100.1 | ||||||||
Common Name | PHAVU_005G124100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bZIP | ||||||||
Protein Properties | Length: 487aa MW: 53732.4 Da PI: 7.2142 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.1 | 2.5e-10 | 182 | 216 | 4 | 38 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 k rr+++NReAAr+sR+RKka++++Le +L Phvul.005G124100.1 182 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKL 216 6889*************************865555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.9E-7 | 179 | 244 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.243 | 181 | 225 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.2E-7 | 181 | 225 | No hit | No description |
Pfam | PF00170 | 2.1E-7 | 182 | 218 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 2.33E-21 | 183 | 233 | No hit | No description |
SuperFamily | SSF57959 | 1.21E-6 | 183 | 226 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 186 | 201 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.2E-27 | 265 | 339 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MASHRIGELG LSESGPSSHH IPYGVLNGIN TPVSSLINQG SAFDFGELEE AIVLHGVKGR 60 NDDSKASLFT ARPAATLEMF PSWPMRFQQT PRGGSKSGGE STDSGLSSKT EPPFEAESPM 120 SKKASSSDHQ AFDQQHLQHR QQLQQDMASD AARTASSQNQ SAAKSQEKRK GAGSTSEKPL 180 DAKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRLKLTQIE QELQRARSQG LFVDCGGVGG 240 NVSSAGAAMF DMEYGRWLEE DHRLMGELRN GLQVPLSDSD MRVMVDGYLS HYDEIFRVKG 300 VAAKSDVFHL INGMWTSQAE RCFLWIGGFR PSDLITMLIQ QLEPLAEQQI MGMYGLRHSS 360 QQAEEALSQG LEQLQQSLVD TIAGGPVVDG VQQMVVAMSK LANLEGFVRQ ADNLRQQTLH 420 QLCRLLTVRQ AARCFIVIGE YYGRLRALSS LWASRPRESL IGDDNSCQTT TEMQVVQHSQ 480 NHFSSF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G124100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 1e-136 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007150072.1 | 0.0 | hypothetical protein PHAVU_005G124100g | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | V7BZJ6 | 0.0 | V7BZJ6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007150072.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4555 | 33 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G124100.1 |
Entrez Gene | 18630879 |
Publications ? help Back to Top | |||
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