PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G123900.1 | ||||||||
Common Name | PHAVU_005G123900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | G2-like | ||||||||
Protein Properties | Length: 431aa MW: 48638.8 Da PI: 8.6274 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.9 | 2.3e-33 | 46 | 100 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm++ gLtl+h+kSHLQkYRl Phvul.005G123900.1 46 KPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRL 100 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.16 | 43 | 103 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-31 | 44 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.66E-16 | 45 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.0E-23 | 46 | 101 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.5E-9 | 48 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.4E-24 | 157 | 202 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MYHHHRHQGK NIHSTSRMPI PSERHMFLQT GNGSGDSGLV LSTDAKPRLK WTPDLHARFI 60 EAVNQLGGAD KATPKTVMKL MGISGLTLYH LKSHLQKYRL SKNLHGQSNN VTHKMTTSAT 120 TGERLSETSG THMSKLSLGP QANNHANFQC LLSKDLHIGE ALQMQIEVQR RLNEQLEVQK 180 HLQLRIEAQG KYLQSVLEKA QDTLGRQNLG IIGLETAKVQ LSELVSKVSS QCLNSAFSEL 240 KELQGFCPQQ THTNQPNDCS MDSCLTSCDI LQKEQKIQNS LRQFNSHVFM EQKESTDARN 300 NLRNSELKWC DDGKKNTFLA PLSKTEERRK YAAETGPGNL SMSIGLERET ENRSSMYPES 360 LIKESQSEGE FQHRNRIKTE TMKAVDEKVC QDYRMPASYF VATRLDLNNH GDNEAATTCK 420 QLDLNRFSWS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 7e-20 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-20 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-20 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-20 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-20 | 45 | 102 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00331 | DAP | Transfer from AT3G04030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G123900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007150070.1 | 0.0 | hypothetical protein PHAVU_005G123900g | ||||
Swissprot | Q9SQQ9 | 1e-138 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | V7BVR8 | 0.0 | V7BVR8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007150070.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3852 | 31 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-141 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G123900.1 |
Entrez Gene | 18630877 |
Publications ? help Back to Top | |||
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