PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G115500.1
Common NamePHAVU_005G115500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 479aa    MW: 52778.1 Da    PI: 5.9153
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G115500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.7e-173582148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+ Ed +lv++vk++G g+W+++ +  g+ R++k+c++rw ++l
  Phvul.005G115500.1 35 KGPWTPAEDAILVEYVKKHGEGNWNSVHKNSGLFRCGKSCRLRWANHL 82
                        79******************************************9986 PP
2Myb_DNA-binding48.91.5e-1588131146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++++eE++ ++d++ +lG++ W++ a+ ++ gRt++++k++w++
  Phvul.005G115500.1  88 KGAFSPEEEQVIIDLHSKLGNK-WARMAAQLP-GRTDNEIKNFWNT 131
                         799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0043082IPR017930Myb domain
SuperFamilySSF466896.74E-3032129IPR009057Homeodomain-like
SMARTSM007171.0E-143484IPR001005SANT/Myb domain
PfamPF002493.9E-153582IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-233689IPR009057Homeodomain-like
CDDcd001676.99E-123782No hitNo description
PROSITE profilePS5129424.96683137IPR017930Myb domain
SMARTSM007171.7E-1487135IPR001005SANT/Myb domain
PfamPF002494.5E-1488131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2590136IPR009057Homeodomain-like
CDDcd001672.32E-1090131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MARTVSNNDS TNDETGDDSN ATTKDESDVK GRVRKGPWTP AEDAILVEYV KKHGEGNWNS  60
VHKNSGLFRC GKSCRLRWAN HLRPNLKKGA FSPEEEQVII DLHSKLGNKW ARMAAQLPGR  120
TDNEIKNFWN TRMKRRQRAG LPIYPPEVHV EATAYHLQHR YLEHQPHSSA SFALLLSSCY  180
PKKLNDPSQS NNSNPNQLQN QPDSSNCYIN PSQKHFKFSN ENGGNSNLAL PLSPLSPYGS  240
SSSTLLNHSF GDHGFIAGSP YEPFPLVPGS TPDISSNQTP TPASSYASGV DGLMGSSSMV  300
NNNSNNNNDY YEVAPLSPPG NSGLLDALVM EAQGLSHNGK SKNEEDPTLS GKLSCKRKNL  360
EYAEEGGTPP MVSAMKKNSS NSTTTENQRD DDNSSSQWSK GKKVMGEDPM EEMNSMDDDL  420
FSLLNQFPLE MPMPEWYRRG ESQSLGLENQ TNASPPDPAD QEYAWTLGTC WNNMPSIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28351367107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G115500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149977.10.0hypothetical protein PHAVU_005G115500g
TrEMBLV7BZ990.0V7BZ99_PHAVU; Uncharacterized protein
STRINGXP_007149977.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.16e-71myb domain protein 101