PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G109800.1 | ||||||||
Common Name | PHAVU_005G109800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 228aa MW: 26232.3 Da PI: 5.2174 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+ +v+++G +W++ ++ g+ R++k+c++rw++yl Phvul.005G109800.1 14 KGSWTREEDKKLIAYVTKYGHWNWRLLPKFAGLARCGKSCRLRWLNYL 61 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 63 | 5.9e-20 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+e++v+++++lG++ W+tIa++++ gRt++++k++w+++l Phvul.005G109800.1 67 RGNFSDEEEEIIVRLHEKLGNR-WSTIAAELP-GRTDNEIKNHWHTVL 112 89********************.*********.***********9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.166 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.323 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-26 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-18 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-17 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.93E-13 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MARTPCCDKN GLKKGSWTRE EDKKLIAYVT KYGHWNWRLL PKFAGLARCG KSCRLRWLNY 60 LRPDVKRGNF SDEEEEIIVR LHEKLGNRWS TIAAELPGRT DNEIKNHWHT VLKKRFEQKA 120 EAKSGIGKES SISRSFETVS ENYSDPDATN ASPVAPAAAT NHESDDGLSF FDAYSEPVSA 180 DFWTEPYLID NSYVPPEFEP VYFSPMYDVE LWNQNEMYLQ ECEGLFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-31 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G109800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 2e-52 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007149916.1 | 1e-171 | hypothetical protein PHAVU_005G109800g | ||||
TrEMBL | V7BXY5 | 1e-170 | V7BXY5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007149916.1 | 1e-171 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-61 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G109800.1 |
Entrez Gene | 18630733 |