PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G109700.1
Common NamePHAVU_005G109700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 327aa    MW: 37400.3 Da    PI: 4.9346
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G109700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-171360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd +lv +v+++G+ +W+  +r  g++R++k+c++rw++yl
  Phvul.005G109700.1 13 KGTWTQEEDRKLVAYVTRYGTWNWRQLPRFAGLTRCGKSCRLRWLNYL 60
                        799*******************************************97 PP
2Myb_DNA-binding53.36.5e-1766110147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg++T+ E+e +++++++lG++ W+ Ia +++ gRt++++k+ w++ 
  Phvul.005G109700.1  66 RGNFTEKEEETIIKLHEELGNK-WSVIATHLP-GRTDNEIKNQWHTT 110
                         89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.745860IPR017930Myb domain
SuperFamilySSF466895.5E-3010107IPR009057Homeodomain-like
SMARTSM007179.6E-131262IPR001005SANT/Myb domain
PfamPF002492.2E-141360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-231467IPR009057Homeodomain-like
CDDcd001672.64E-91560No hitNo description
PROSITE profilePS5129424.42261115IPR017930Myb domain
SMARTSM007172.1E-1665113IPR001005SANT/Myb domain
PfamPF002492.2E-1566110IPR001005SANT/Myb domain
CDDcd001674.41E-1168111No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2568114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MRTPSWDSSG LKKGTWTQEE DRKLVAYVTR YGTWNWRQLP RFAGLTRCGK SCRLRWLNYL  60
RPNIKRGNFT EKEEETIIKL HEELGNKWSV IATHLPGRTD NEIKNQWHTT LKKRFGKKAV  120
HTKTNVKAAK SNSSVSNQDK DSIQNNGFFH EDSPSPTISR ASDPDPLSLE VSSIEFSSTT  180
SDYTTNDNLL MEEGFDFLYA CLEDLNQNIS TESLHISHGT IQNNGIENFH GSDPMTMEHV  240
WAESPLSSYN ENVVVENDDF GFLEAIQPIT ENSWREAFVA DTSLIPNEFL VPLVNESESY  300
FSSTYDARDI WCLRDNSHDL DVNLFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26111155108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G109700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149915.10.0hypothetical protein PHAVU_005G109700g
TrEMBLV7BVC80.0V7BVC8_PHAVU; Uncharacterized protein
STRINGXP_007149915.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1674767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-55myb domain protein 14