PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G101500.1
Common NamePHAVU_005G101500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 392aa    MW: 43678.9 Da    PI: 8.3278
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G101500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.6e-08122142526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          C++++r G C++Gd C +aHg
  Phvul.005G101500.1 122 VCPDYRR-GGCNRGDACEYAHG 142
                         7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.73E-5116146IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5117143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206118144IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5121144IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-6122142IPR000571Zinc finger, CCCH-type
SMARTSM003562.3152175IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.362152176IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MTSVCAQQHK FHPSHQFLSP KKTLREIDIP PRKLLTRRAT AACGISDLFS DDTMLQKFLP  60
SNNLDDSDED DPYSSDHFRM FEFKVRRCTR SRSHDWTDCP FAHPGEKARR RDPRRYHYSG  120
TVCPDYRRGG CNRGDACEYA HGVFECWLHP AKYRTEACKD GKNCKRKVCF FAHTPRQLRI  180
LPVTSPSSDD MSCTKSINKL FNHASRSNNN CCLFCHCVSS SSSSTTASPT STLFNISHYS  240
PPLSPSSSSS PPPSPLKPRN GVSVSPISRY GAANVNPHHG VVSYKEAFAE FVNSLEGLSL  300
NEGSPVSGAK PLNLPWFDVS LNCEEQQQQR QPLSASSFGC EDPQQFIYSP PSTRTPTNVK  360
LCSNRFIGND NKVVGGESNV PDLAWVNELL M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G101500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149822.10.0hypothetical protein PHAVU_005G101500g
TrEMBLV7BYW70.0V7BYW7_PHAVU; Uncharacterized protein
STRINGXP_007149822.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-72C3H family protein