PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G100700.1 | ||||||||
Common Name | PHAVU_005G100700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | G2-like | ||||||||
Protein Properties | Length: 436aa MW: 48079 Da PI: 6.2912 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.7 | 1.1e-27 | 165 | 219 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ile+m++++Lt+++++SHLQkYR++ Phvul.005G100700.1 165 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSH 219 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.042 | 162 | 221 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-26 | 163 | 222 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.84E-18 | 163 | 222 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-26 | 165 | 219 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-7 | 168 | 217 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MLAVSPLRSR SDEEQGEMES FSIGTDDFAD LSEGNLLESI NFDDLFMGIN DDEDVLPDLE 60 MDPELLAEFS LSEESEIVSS VSVANNKSDD RNENNIVITE TQDEVIAANF CSDSGSNSGS 120 SRGEETGNKS DESTHSVGVN PSPKESEKGR KSSSHSRNNQ QGKRKVKVDW TPELHRRFVQ 180 AVEQLGVDKA VPSRILEIMG IDCLTRHNIA SHLQKYRSHR KHLIAREAEA ARWSQRKQFM 240 GAASVGRGGG KRDVNPWLAP TMGFPPMTPM HHFRPLHVWG HHTMDQSFIH MWPKHLPYSP 300 SRPAWPPRTA PSPPPPDPLY WHQHQRAPNA PTPGTPCFPQ PLTTTRFGSQ TVPGIPPHHA 360 MFQMVDPGIG LPATQPPPRP LLDFHPSKES IDAAISDVLS KPWLPLPLGL KAPALDGVMG 420 ELQRQGIPKI PPSCA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-15 | 162 | 217 | 2 | 57 | ARR10-B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G100700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007149809.1 | 0.0 | hypothetical protein PHAVU_005G100700g | ||||
Swissprot | Q9SIV3 | 1e-91 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | V7BXL1 | 0.0 | V7BXL1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007149809.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4242 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 4e-80 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G100700.1 |
Entrez Gene | 18630642 |