PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G087400.1
Common NamePHAVU_005G087400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 375aa    MW: 41870 Da    PI: 9.1526
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G087400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.11.3e-201360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++l+d+++++G g W+tI++  g++R++k+c++rw +yl
  Phvul.005G087400.1 13 KGPWTPEEDQKLIDYIHKHGHGKWRTIPKNAGLKRCGKSCRLRWANYL 60
                        79********************************************97 PP
2Myb_DNA-binding53.94e-1766110147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rgr++ eE+e +++++  lG++ W+tIa+ ++ gRt++++k++w+++
  Phvul.005G087400.1  66 RGRFSFEEEEAIIQLHSVLGNK-WSTIAANLP-GRTDNEIKNYWNTH 110
                         89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-26763IPR009057Homeodomain-like
PROSITE profilePS5129427.378864IPR017930Myb domain
SuperFamilySSF466897.86E-3210107IPR009057Homeodomain-like
SMARTSM007178.0E-171262IPR001005SANT/Myb domain
PfamPF002498.4E-191360IPR001005SANT/Myb domain
CDDcd001674.99E-141560No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2664115IPR009057Homeodomain-like
SMARTSM007173.4E-1665113IPR001005SANT/Myb domain
PROSITE profilePS5129421.32565115IPR017930Myb domain
PfamPF002491.1E-1466110IPR001005SANT/Myb domain
CDDcd001675.26E-1268111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MTNSSTEKNG LKKGPWTPEE DQKLIDYIHK HGHGKWRTIP KNAGLKRCGK SCRLRWANYL  60
RPDIKRGRFS FEEEEAIIQL HSVLGNKWST IAANLPGRTD NEIKNYWNTH IKKKLFKMGI  120
DPVTHTPRLD VLQLASILNT SLFNSSPQFN HPFLSGIGRS VINPTHLLSL LSTLLSCQSR  180
NNPDNVLNHN NYQQTISQLS GSNLLQNQPQ CSQMQLETIP TFQPNQPQVS LQENLIAKSN  240
PLNMEHQLIK SKLQNQISPL ATSFSLQNLW HYDNGDNISG LSVPQSSSAM QCFSSSKFNS  300
IFNNLLGNQN LSHNEGIPNF NLTSLLSSTT SSSPLNSSSS TTFFNGTTED ERDTYGSNIL  360
MYNISNGLND SGLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31111155108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G087400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149649.10.0hypothetical protein PHAVU_005G087400g
TrEMBLV7BX710.0V7BX71_PHAVU; Uncharacterized protein
STRINGXP_007149649.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151201013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.15e-87MYB-like 102