PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G076700.1
Common NamePHAVU_005G076700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family DBB
Protein Properties Length: 308aa    MW: 33884.9 Da    PI: 4.8996
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G076700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.8e-06447542
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         C+ +e  e++  C  ++  lC +C ++ H        H++v+l
  Phvul.005G076700.1  4 QCNVCEAAEAKVLCCADEAALCWECDEKVHAAnklaskHQRVSL 47
                        7******99*********************66889999998875 PP
2zf-B_box26.51.3e-085494337
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                        ++kC+ ++e    +fC +++ l+C++C l++H        H
  Phvul.005G076700.1 54 MPKCDICQEALGYFFCLEDRALFCRKCDLAIHTAntyvsgH 94
                        799*******9*********************654455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.139147IPR000315B-box-type zinc finger
CDDcd000211.05E-8347No hitNo description
SMARTSM003363.1E-10447IPR000315B-box-type zinc finger
SMARTSM003361.0E-155299IPR000315B-box-type zinc finger
PROSITE profilePS501198.9735299IPR000315B-box-type zinc finger
PfamPF006432.5E-65495IPR000315B-box-type zinc finger
CDDcd000219.92E-105599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKIQCNVCEA AEAKVLCCAD EAALCWECDE KVHAANKLAS KHQRVSLSTS SSHMPKCDIC  60
QEALGYFFCL EDRALFCRKC DLAIHTANTY VSGHQRFLLT GVRVGLEATE PGASSTSLKS  120
ESGEKISDTK SSSISRKVST VPQPSDYNEL LPIEVGGVEG FPPAKESFGG GSTAGNISQW  180
TIDEFIGLNE FSQNYEYMEG SSRVKIGQGW GQSFLPKADG GKLGDFDSPF LRSGDEEMEE  240
EEDYLERVPD SSWTVPQIPS PPTASGLHWP KHTQYSSDSL LFVPDIRFSQ MQHSEISSIF  300
SRRRRQL*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G076700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-178AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149516.10.0hypothetical protein PHAVU_005G076700g
SwissprotQ9SYM23e-86BBX22_ARATH; B-box zinc finger protein 22
TrEMBLV7BWU00.0V7BWU0_PHAVU; Uncharacterized protein
STRINGXP_007149516.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.17e-87light-regulated zinc finger protein 1