PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G047400.1 | ||||||||
Common Name | PHAVU_005G047400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 323aa MW: 36698.2 Da PI: 7.5013 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv++++ +G ++W++++++ g+ R++k+c++rw +yl Phvul.005G047400.1 13 RGLWSPEEDEKLVRYINIHGHKSWSSVPKYAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.2e-17 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+++++d ++ lG++ W+ Ia++++ gRt++++k++w++ Phvul.005G047400.1 66 RGSFTAEEEQIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-26 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.073 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.46E-30 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-14 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-17 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.33E-12 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.468 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-26 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-16 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-16 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.62E-12 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MGHRCCSKQR IKRGLWSPEE DEKLVRYINI HGHKSWSSVP KYAGLQRCGK SCRLRWINYL 60 RPDLKRGSFT AEEEQIIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL 120 DPQTHNLLSS HRRSSASTIS NMHQNSNSIF IMSSHTPNAP VKTTFQTFSS LPKPPPNIVQ 180 TPSSFVTSEY QTSPIISNKF SSDWPCELLM DNASNICSPS YMNPTAVELS NNESVANWVS 240 RVNVDDFRSQ TLEERTQVLV QQEKDKICED MGTDVREANK GYLESSASFE SSNFDFGLLE 300 SVLSSEFISH DLSCMDELAW NF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-32 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G047400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007149171.1 | 0.0 | hypothetical protein PHAVU_005G047400g | ||||
TrEMBL | V7BVV5 | 0.0 | V7BVV5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007149171.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3466 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 2e-81 | myb domain protein 67 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G047400.1 |
Entrez Gene | 18630087 |