PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G042900.1
Common NamePHAVU_005G042900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 414aa    MW: 46757.2 Da    PI: 8.6091
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G042900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016361380323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C+ CgksF r++ + +H++++
  Phvul.005G042900.1 361 CSQCGKSF-RPEKMYKHMKSC 380
                         ********.**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF061367.1E-3813288IPR010369Protein of unknown function DUF966
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEGKGLGEVR RLHIIYFLSQ IGGRADHPHL IRVLHLTRNG VYLRDVKRWL GELRGKELPE  60
VFSWSYKRRY KSGYVWQDLL DDDLITPISD NEYILKGSQI HTIPFATTPS LEEKKTTVCD  120
INAEKMCPQS QLVEDREHQQ QPPQSLTEEE SQIQADHNSK TNSPTKGSSE ISQDSLVFSS  180
DRSSVTDDDS SKVEEEKHLE IKTGKESFNE MHQEKLETCT LPSLYHNLLS KKGTHKDDQN  240
KTHSPDSSLS TISSSSSSQS SFTKIRSNST KVSNIFRNWI TCSKKNSKEP NNIPETKPEI  300
CKGDRLGGSE RCFRTSWGHH DQKQQYGARK SFDGEETNGS RKKLGDLLNQ TSSKPFGGPI  360
CSQCGKSFRP EKMYKHMKSC KGMKALGKSA PNVEEAQLPR SSTSSHTHYF LTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G042900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-172AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149122.10.0hypothetical protein PHAVU_005G042900g
TrEMBLV7BX340.0V7BX34_PHAVU; Uncharacterized protein
STRINGXP_007149122.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83781620