PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G039500.1
Common NamePHAVU_005G039500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 731aa    MW: 79308.4 Da    PI: 9.8361
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G039500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.4e-102372246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        ++W t+E++ll+ av+++G+++W+t+a +++     +  t+ +c  ++++
  Phvul.005G039500.1 23 QAWGTWEELLLAFAVNRHGSKDWDTVAMEVQsratrLLATARHCEQKFHD 72
                        79**********************************99*******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002492.3E-82372IPR001005SANT/Myb domain
CDDcd001670.001962473No hitNo description
SMARTSM002971.1E-13340450IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.4E-18347448IPR001487Bromodomain
SuperFamilySSF473701.57E-17351455IPR001487Bromodomain
CDDcd043698.56E-15354445No hitNo description
PfamPF004398.5E-11355435IPR001487Bromodomain
PROSITE profilePS5001413.492359431IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MENHQNHKAE PEPDRDKNHH HSQAWGTWEE LLLAFAVNRH GSKDWDTVAM EVQSRATRLL  60
ATARHCEQKF HDLSRRFADQ CNDGVTPPQQ NGAADGDNSD HVPWLDELRK LRVAELRRDV  120
QRSDVSILSL QLEVKRLEEE KTKENDCKDD KKPDLAVSGE ARAENDKTGG EVEEAGPANS  180
EPERTANAGK MLPTTGDESD RENQSVNESN STGSRFDKTG EGEAKLKVEP DPVQTGSKEP  240
DPVARKGKPV GEESNNGSYD ALAKVPTCES VPPSDERKVE QDDDSSELHD SVAHSGEGGT  300
RESSEVQSSA SLTRKRKTRR RKEVSGSDGR GGGTSTPPEN DEVAMVKSEP LVGVLELIKG  360
HEHSSFFERR LESQLESDRY KDIVKQPLDL ETIQLRIQKG QYSSCTSAFF RDLLLLFTNA  420
TVIFPYDSPE SQAARQLHRL VTTEMKNYGQ AQSDPIPRKN DSLPPNVPLA KPDSLFSKNK  480
ASGPILVCRK RSSMSAKPSS TTFGQKGVDQ PVFNDKKERP SSDSKPPMKP SSSDTDEEEP  540
PKAKEKPVTG ARSLRRSNKN LNNKKLSSNS TPKAGSSGNK PSETPKPEKS KAEGGPDKKR  600
NAAADFLKRI KRNTSVEAVK GGSGGGGGGG GSSSSSKGGG GGVGVKEQKK IVNNGKGDKG  660
KERASRHSGG GGSASGDKRN KNIENNSQSK RSVGRPPKKV VETNAGSSKR GRENSASAGK  720
DKRPKKRSKK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312317TRKRKT
2315322RKTRRRKE
3721729KRPKKRSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G039500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149081.10.0hypothetical protein PHAVU_005G039500g
TrEMBLV7BVJ80.0V7BVJ8_PHAVU; Uncharacterized protein
STRINGXP_007149081.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.13e-77DNA-binding bromodomain-containing protein