PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G036900.1
Common NamePHAVU_005G036900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 438aa    MW: 48178.5 Da    PI: 6.505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G036900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12365409654
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +++Er RR ri +++ +L++l Pk+     k  s a++L +AveYIk+L
  Phvul.005G036900.1 365 SIAERVRRTRISERIKKLQDLFPKS----EKQTSTADMLDLAVEYIKDL 409
                         689*********************8....577***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.57359409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-14362425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.60E-11363414No hitNo description
Gene3DG3DSA:4.10.280.108.5E-14364422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-9365409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-11365415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSVMYSPVLK YSDVEHRLMK NQEMDSSIGN PQQYCHQPNS GLQRYCSAPS SLLASLIDNN  60
IHDCFNEESF TSEIHQHYPP STSSEMDTML SKLLPSNNGW SNSEALQEFG SKPVKQEIGE  120
SVPQGPPQQN EYSYGGSQLI YQSQQIQGLP NGSSSAFGSS FGVVNSMASE NPIQPKLGAR  180
NCSNLFRQKS SPAGFFSIQN DLAALREVGA FKANDVSNGQ ATTSSSGLSS SLAFSSRPSS  240
CLKHMPQIAE NGNESLEENC DQSRILANED GNSKFCIPSF TSEIWESSSF NAPKTESDDE  300
IMFSTSNGLE SQESDFGYQN LGLTHHQSLP SSSTKMSSIQ RFLEIQGSVP CKIRAKRGFA  360
THPRSIAERV RRTRISERIK KLQDLFPKSE KQTSTADMLD LAVEYIKDLR QQVKVLSDCK  420
AKCKCTSNEK HSSRTCA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G036900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149053.10.0hypothetical protein PHAVU_005G036900g
TrEMBLV7BSR50.0V7BSR5_PHAVU; Uncharacterized protein
STRINGXP_007149053.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-48bHLH family protein