PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.005G026300.1

Common Name

PHAVU_005G026300g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

SRS

Protein Properties

Length: 344aa MW: 37157.5 Da PI: 7.8693

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G026300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	184	6e-57	144	294	7	153
DUF702 7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrelkskkqsalsstkls 92 CqdCGn+akkdC ++RCRtCCk rg+dC+thvkstW+p+ +rrer a+a+ +++ + +++ +++s++++++ ++ + Phvul.005G026300.1 144 VCQDCGNRAKKDCIFRRCRTCCKGRGYDCNTHVKSTWIPSIRRRERDMVVASAAGGGSKRPraivgS-SQNATATSHSSNSNATTPKSLAT 233 6*******************************************887777655444433344431.22222222222222222222222 PP DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++++ ++slP +v+++avf+c rvs++ +ge+e+aY ++v+i+GhvfkG+Lyd+G++ Phvul.005G026300.1 234 ISSHQDGRLKESLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVQISGHVFKGFLYDHGVD 294 222333455566*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.0E-54	144	294	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	8.6E-26	144	186	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.3E-24	246	293	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MSMLGLRDLV LIAQTPSLHQ HHHHHHHQHQ GQQQPISENQ TPNLPLPSSA ALSVGFGIFP 60 LLTATPCVPH PHQTNEIQEC GGGGGGAATT TNYWNLKMCP EVNPPKKGVM NMDDDEDEDD 120 ERHHQHKGVM ESEENGIYGP DFRVCQDCGN RAKKDCIFRR CRTCCKGRGY DCNTHVKSTW 180 IPSIRRRERD MVVASAAGGG SKRPRAIVGS SQNATATSHS SNSNATTPKS LATISSHQDG 240 RLKESLPGHV RAPAVFKCHR VSAIGNGEDE FAYLATVQIS GHVFKGFLYD HGVDGKIGNA 300 VPCVSELQLG NNCSGKNREC SSAIGLPNNT AYPASATSTF LNR*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MSMLGLRDLV LIAQTPSLHQ HHHHHHHQHQ GQQQPISENQ TPNLPLPSSA ALSVGFGIFP  60
LLTATPCVPH PHQTNEIQEC GGGGGGAATT TNYWNLKMCP EVNPPKKGVM NMDDDEDEDD  120
ERHHQHKGVM ESEENGIYGP DFRVCQDCGN RAKKDCIFRR CRTCCKGRGY DCNTHVKSTW  180
IPSIRRRERD MVVASAAGGG SKRPRAIVGS SQNATATSHS SNSNATTPKS LATISSHQDG  240
RLKESLPGHV RAPAVFKCHR VSAIGNGEDE FAYLATVQIS GHVFKGFLYD HGVDGKIGNA  300
VPCVSELQLG NNCSGKNREC SSAIGLPNNT AYPASATSTF LNR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G026300.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015040	0.0	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007148931.1	0.0	hypothetical protein PHAVU_005G026300g
Swissprot	Q94CK9	9e-54	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	V7BV46	0.0	V7BV46_PHAVU; Uncharacterized protein
STRING	XP_007148931.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5704	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-51	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Phvul.005G026300.1
Entrez Gene	18629870

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]