PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G012900.1 | ||||||||
Common Name | PHAVU_005G012900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 512aa MW: 56693.4 Da PI: 4.7509 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.6e-18 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l Phvul.005G012900.1 35 KGPWTAAEDVILVDYVNKHGEGNWNAVQKYSGLSRCGKSCRLRWANHL 82 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 51.2 | 2.9e-16 | 88 | 131 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++ ++++++++G++ W++ a++++ gRt++++k++w++ Phvul.005G012900.1 88 KGAFTAEEEQMIAELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 131 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.874 | 30 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.42E-30 | 34 | 129 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-15 | 34 | 84 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 35 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-23 | 36 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.19E-11 | 37 | 82 | No hit | No description |
PROSITE profile | PS51294 | 24.889 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-16 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 88 | 131 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-26 | 90 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.23E-11 | 90 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MSQITHDIDD NVHGEDQTGS QLNDEGNGGG VVLKKGPWTA AEDVILVDYV NKHGEGNWNA 60 VQKYSGLSRC GKSCRLRWAN HLRPNLKKGA FTAEEEQMIA ELHAKMGNKW ARMAAHLPGR 120 TDNEIKNYWN TRMKRRQRAG LPLYPPEIVM QAFQDSKHGQ GTGEINDGDG CHHDFMEKNN 180 YEMHDAIFDS LKENQGILPF VPELSDISAN SILPNVLGSP PYCNFLPSTL PNQDHLQETS 240 VSFIGSNELN TNGFYPFNHF KDNTSGKIAE SFGLHSPLDH GASSYGSICY SHSLSNDNYS 300 TSKPTSEAVK SELPSLQYPE TEFVSWGSSP PPPLNESIDV LIHSPQPPYA LDSGSSPLSC 360 CFLNEFLYQQ AKALNYSKNN WSDKSSSSSI ATPVDRAESS ALNMYETEWE DYADPVSPFG 420 ATSILNEHPV VGTNGKSWDG WEPFQTFSGN NEKLQSVDQV LAPKSENQSM SLLNLTWPDV 480 LLASDWHELY SEHDGMNHAG MIDASDDVKR Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 2e-29 | 32 | 136 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 2e-29 | 32 | 136 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G012900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148771.1 | 0.0 | hypothetical protein PHAVU_005G012900g | ||||
TrEMBL | V7BUN6 | 0.0 | V7BUN6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148771.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 1e-102 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G012900.1 |
Entrez Gene | 18629734 |