PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G011700.1 | ||||||||
Common Name | PHAVU_005G011700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | FAR1 | ||||||||
Protein Properties | Length: 874aa MW: 99618.4 Da PI: 7.3771 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.1 | 1.1e-26 | 119 | 221 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ +e++ +r+ ++t+Cka+++vk++ dgkw+++ Phvul.005G011700.1 119 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSfnrprarqnkqdSENSTGRRSCSKTDCKASMHVKRRADGKWVIH 209 5*******************************************9999***999887665556669999********************** PP FAR1 80 kleleHnHelap 91 ++++eHnHel p Phvul.005G011700.1 210 SFVKEHNHELLP 221 *********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-24 | 119 | 221 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.9E-30 | 318 | 410 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.371 | 598 | 634 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 8.2E-5 | 606 | 632 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.7E-6 | 609 | 636 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 874 aa Download sequence Send to blast |
MVNTLCRQRV LYQLNVVSST LETTEPKALI MDIDLRLPSG EHDKEDEETT TIDNMLDSEE 60 KLHNGGIDGR NIVEAGIEVH ALNGGDLNSP TVDIVMFKED TNLEPLSGME FESHGEAYSF 120 YQEYARSMGF NTAIQNSRRS KTSREFIDAK FACSRYGTKR EYDKSFNRPR ARQNKQDSEN 180 STGRRSCSKT DCKASMHVKR RADGKWVIHS FVKEHNHELL PAQAVSEQTR RMYAAMARQF 240 AEYKTVVGLK NEKNPFDKGR NLGLESGEAK IMLDFFIQMQ NMNSNFFYAV DLGEDQRLRN 300 LLWIDAKSRN DYINFCDVVS FDTTYVRNKY KMPLALFVGV NQHYQFTLLG CALISDESAA 360 TFSWLFRTWL KGVGGQVPKV IITDHDKTLK SVISDIFPNS SHCVCLWHVL GKVSENLAPV 420 IKKHENFMAK FEKCIYRSLT SDDFEKRWWK IVDKCELRED ECMQSLYEDR KLWAPTFMKD 480 VFLGGMSTVQ RSESVNSFFD KYVHKKTSVQ DFVKQYESIL QDRYEEEAKA DSDTWNKLAT 540 LKTPSPLEKS VAGIFTHAVF KKIQAEVVGA VACHPKADRQ DETTTVHRVH DMETNKDFFV 600 VVNQVKFELS CICRLFEYRG YLCRHALIVL QYSGQSVFPS QYILKRWTKD AKLRNIIGEE 660 SEHMLSRVQR YNDLCQRSLK LSEEGSLSQE SYSIAFHALH EAHKSCVSVN NSSKSPTEAG 720 TSGAHGQLST EEDTQSRNMS KSNKKKNPTK KKKVNSEAEV MTVGALDNLQ QMEKFSTRAA 780 VTLEGYYGTQ QSVQGMLNLM GPTRDDYYGN QQTLQGLGPI SSIPTSHDGY YGAHQGIPGL 840 AQLDFLRTGF TYSIRDDPNV RATQLHEDPS RHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00078 | ChIP-seq | Transfer from AT3G22170 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G011700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM587701 | 0.0 | KM587701.1 Glycine max clone GmFHY3 FHY3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148758.1 | 0.0 | hypothetical protein PHAVU_005G011700g | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | V7BRX5 | 0.0 | V7BRX5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148758.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G011700.1 |
Entrez Gene | 18629722 |