PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G174000.2
Common NamePHAVU_004G174000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 449aa    MW: 50950.6 Da    PI: 7.1646
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G174000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.64.9e-36471891128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 
                         lp+G++F+Ptd+el+ e+L++kve+k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+      
  Phvul.004G174000.2  47 LPAGVKFDPTDQELI-EHLEAKVEAKNMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnecd 135
                         799************.99*********5553344444434666646**********.555666799******************8455555 PP

                 NAM  78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Phvul.004G174000.2 136 lqGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189
                         4433778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-3843208IPR003441NAC domain
PROSITE profilePS5100533.08247208IPR003441NAC domain
PfamPF023652.9E-1648189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSKMSNLSSV SSSDLIDAKL EEHQLCGSKQ CPGCGHKFEG KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVEA KNMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QNECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT  180
NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRS ATTEGSGEPN NNSSRRDSGS  240
GSSSSKEIVT HRDEMSAPIT TFTHHPFDIH HLKPDHFSFI PFRKTFDEVG MGEASTAREV  300
VQASGSCEDV HERQRAQHVA HHHQQQQQHQ QQQHAHHQIS NSAFHISRPS HPISTIISPP  360
PLHHTSIILD DNSYHHVSRI MLQNENFQQQ QQQHHKLGGR SASGLEELIM GCTSTEIKEE  420
SSMTNPQEAE WLKYSSYWPD PDNPDHHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-134518913140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G174000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152951.10.0hypothetical protein PHAVU_004G174000g
RefseqXP_007152952.10.0hypothetical protein PHAVU_004G174000g
RefseqXP_007152953.10.0hypothetical protein PHAVU_004G174000g
SwissprotQ9M0F80.0NAC75_ARATH; NAC domain-containing protein 75
TrEMBLV7C7P60.0V7C7P6_PHAVU; Uncharacterized protein
STRINGXP_007152951.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-139NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]