PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.004G169500.1 | ||||||||
Common Name | PHAVU_004G169500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 161aa MW: 18878.7 Da PI: 5.1112 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.7 | 6.5e-11 | 75 | 140 | 21 | 83 |
HH.HTT...---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS B3 21 kfaeeh...ggkkeesktltledesgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFk 83 +f++e ++k+ +t++d+ g ++ + l+ +k s + yvl +GW +F++++ L+e+D+v ++ Phvul.004G169500.1 75 QFLKEEeeqELKEGL--PVTVYDKGGHEFPMMLKKfDKDSTSyYVLNRGWFNFCDQKLLQENDVVALR 140 444444554555444..59999***********6558888889**********************887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.94E-10 | 74 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.7E-8 | 75 | 141 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-7 | 77 | 144 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.61E-9 | 88 | 158 | No hit | No description |
PROSITE profile | PS50863 | 8.995 | 91 | 160 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
MAEGSSNDAG KGKGIAQERE SWREIMQKDE MQVEFVFTIG HVKDLELSMP YRAQLTNDKW 60 NLFLRVPYLE EILLQFLKEE EEQELKEGLP VTVYDKGGHE FPMMLKKFDK DSTSYYVLNR 120 GWFNFCDQKL LQENDVVALR TFRHAITDKL SFLVTFIKLR * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.004G169500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152899.1 | 1e-116 | hypothetical protein PHAVU_004G169500g | ||||
TrEMBL | V7C692 | 1e-115 | V7C692_PHAVU; Uncharacterized protein | ||||
STRING | XP_007152899.1 | 1e-116 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21340 | 2 | 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.004G169500.1 |
Entrez Gene | 18633316 |