PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G151600.1
Common NamePHAVU_004G151600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 901aa    MW: 101809 Da    PI: 5.4752
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G151600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-10437481246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g+WT+eEd  l+  v+ +G ++W  Ia+ +g+ Rt+ qc sr+q 
  Phvul.004G151600.1 437 GAWTKEEDRSLLLIVQDMGIRNWFNIASSLGTSRTPFQCLSRFQR 481
                         79*****************************************96 PP
2Myb_DNA-binding36.61e-11491533346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          WT+eEd +l  av+ +G g+W  +a+ +  +Rt+ qc +rw k
  Phvul.004G151600.1 491 EWTEEEDAQLCSAVTYFGDGNWQCVASVLE-RRTGTQCSNRWKK 533
                         7*****************************.***********98 PP
3Myb_DNA-binding38.13.5e-12540583146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         +g++T+eEd +l  a  ++G + W+ Ia++++ gR   qc++r+++
  Phvul.004G151600.1 540 KGSFTPEEDIRLTVAAMLFGRK-WNQIAKYVP-GRIQSQCRDRYLN 583
                         799*****************99.*********.***********98 PP
4Myb_DNA-binding42.71.3e-13593634346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          WT+ Ed++l  a+ ++G   W++Ia++++  Rt+ qc+ rw  
  Phvul.004G151600.1 593 GWTEKEDLRLEAAIGKHGYC-WSKIAEEVP-PRTDSQCRKRWKV 634
                         5*****************99.*********.9**********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.9334432IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-8404442IPR009057Homeodomain-like
PROSITE profilePS500904.855405430IPR017877Myb-like domain
SuperFamilySSF466891.2E-16413480IPR009057Homeodomain-like
PROSITE profilePS500909.837431483IPR017877Myb-like domain
SMARTSM007173.5E-10435485IPR001005SANT/Myb domain
CDDcd001671.09E-7438483No hitNo description
PfamPF139211.8E-15439500No hitNo description
Gene3DG3DSA:1.10.10.604.1E-15443496IPR009057Homeodomain-like
PROSITE profilePS5129416.376484539IPR017930Myb domain
SuperFamilySSF466892.08E-22487581IPR009057Homeodomain-like
SMARTSM007172.3E-6488537IPR001005SANT/Myb domain
CDDcd001671.13E-8491535No hitNo description
Gene3DG3DSA:1.10.10.609.5E-17497546IPR009057Homeodomain-like
SMARTSM007177.4E-12539587IPR001005SANT/Myb domain
PfamPF002492.1E-11540583IPR001005SANT/Myb domain
PROSITE profilePS512949.491540585IPR017930Myb domain
CDDcd001674.02E-7542585No hitNo description
Gene3DG3DSA:1.10.10.607.6E-18547592IPR009057Homeodomain-like
SuperFamilySSF466899.31E-22565637IPR009057Homeodomain-like
PROSITE profilePS5129423.123586640IPR017930Myb domain
SMARTSM007175.5E-12590638IPR001005SANT/Myb domain
PfamPF002491.7E-12593634IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-15593634IPR009057Homeodomain-like
CDDcd001671.19E-11594635No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MTPRVGDFEN DNLSSTDDDD DDGFKEDMAA LSRACMIVVP GADDYSAAED DVQPMVPLTD  60
DAGTAIVPVA TDSDSDDQDD LECLKRVQSL YQPLSVLPPL EPAVAVSDDD DDVDDLETVR  120
AIMKRFGDYN EGLHEGGINK LVEEDQISSL GCEGDIANGS IHYESDGGEL CPFSQDPNEA  180
ATEELIENIE MQLSDFVESS EPDAWELSRL PQKKMSCPPV VQCFIDAIKK NRDLQRFLRG  240
KLIELEAKIE ESKKIRNKIK ILKDFQASCT RRTGNILSLK KDPRVQLISA KRSSARKKSK  300
QKHKKVPAMC YGPEENSRVA NYRMVLERFP LSLDRKKWST VDRGNLFKGI KQQFQEMVLQ  360
LSLSLDRTSS EGLLGDADDM DNIFASVKDL EVTPERIRQF LPKVNWDLMA SIYVGGHTGA  420
ECESRWLNYE DPLINQGAWT KEEDRSLLLI VQDMGIRNWF NIASSLGTSR TPFQCLSRFQ  480
RSLNPSMLNS EWTEEEDAQL CSAVTYFGDG NWQCVASVLE RRTGTQCSNR WKKSLCPEKK  540
GSFTPEEDIR LTVAAMLFGR KWNQIAKYVP GRIQSQCRDR YLNSLDPSLK WGGWTEKEDL  600
RLEAAIGKHG YCWSKIAEEV PPRTDSQCRK RWKVLYPEQV PLLQEARKKQ RAIIGSNFVD  660
RKSERPTITL NDFLPLLALA PKSDVGASDI CKKRKSSNVP KKTSSKKGAK RTKRTKEVPD  720
TEVYHDDELY PVSTCSNLPK KKMRFKRRIK SSRNPPQELV DISCSDKVTY IEGSENQSTC  780
IPNSENQDSD NIPLACFLRK KSNEILSRFN KKLSQTSFSR ITDVPEQVES QNPSDDQGGL  840
PHSCETVGTK KLLVQPNVTS DRRVRSDDDD DDHMTLACFL KNKPKKEVNL LKDMVRALPN  900
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-274056327155MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-274056327155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G151600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152696.10.0hypothetical protein PHAVU_004G151600g
TrEMBLV7C5Z50.0V7C5Z5_PHAVU; Uncharacterized protein
STRINGXP_007152696.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.21e-162myb domain protein 4r1