PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G146000.2 | ||||||||
Common Name | PHAVU_004G146000g, PHAVU_004G146100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 284aa MW: 31439.1 Da PI: 10.3827 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 353.6 | 4.2e-108 | 1 | 283 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdaki.rernlalsekkaavaerd.........maflqrdkalaernkalverdnk 80 md d+ + rn+gyyepa+s+k++lglqlmss++e+ r++ + ls++++a+++rd m++ +rd+++++ +++k Phvul.004G146000.2 1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGgRNAAV-LSGTNGAFHHRDigmsqttypMEY-MRDAWMSS-------QREK 82 888888888*************************988766355555.9***********************.9*****99.......899* PP GAGA_bind 81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171 ++++++++++ ++ +++t+s++++q+ + ++ + +ee+ +e++p++e + ++kkrq++k+pk++kakk k+ + Phvul.004G146000.2 83 YMNMIPTNHN--------YGGIPETSSAHHIQM-----IPPPELP-KEERAVEEEPVVE----KASGGTRKKRQSPKVPKSPKAKKSKRGP 155 ******9997........99************9.....3344444.4455555566555....445566777899**************99 PP GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSq 262 +++k+++++ +r++ +kk++++v+ng+++D+s++P+PvCsCtG ++qCY+WG+GGWqSaCCtt +SvyPLP+stkrrgaRiagrKmS Phvul.004G146000.2 156 RVPKNENAPTV--QRARVPKKTTEIVINGIDMDISSIPIPVCSCTGGPQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSI 244 99977777777..79**************************************************************************** PP GAGA_bind 263 gafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 gafkk+LekLaaeGy++snp+DL+++WAkHGtnkfvtir Phvul.004G146000.2 245 GAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 283 **************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 4.9E-167 | 1 | 283 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.5E-112 | 1 | 283 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM SSMPEKPLIG GRNAAVLSGT NGAFHHRDIG 60 MSQTTYPMEY MRDAWMSSQR EKYMNMIPTN HNYGGIPETS SAHHIQMIPP PELPKEERAV 120 EEEPVVEKAS GGTRKKRQSP KVPKSPKAKK SKRGPRVPKN ENAPTVQRAR VPKKTTEIVI 180 NGIDMDISSI PIPVCSCTGG PQQCYRWGSG GWQSACCTTG MSVYPLPMST KRRGARIAGR 240 KMSIGAFKKV LEKLAAEGYN FSNPIDLRTY WAKHGTNKFV TIR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G146000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152627.1 | 0.0 | hypothetical protein PHAVU_004G146000g | ||||
Refseq | XP_007152628.1 | 0.0 | hypothetical protein PHAVU_004G146000g | ||||
Refseq | XP_007152629.1 | 0.0 | hypothetical protein PHAVU_004G146000g | ||||
Refseq | XP_007152630.1 | 0.0 | hypothetical protein PHAVU_004G146100g | ||||
Refseq | XP_007152631.1 | 0.0 | hypothetical protein PHAVU_004G146100g | ||||
Swissprot | Q9SKD0 | 6e-93 | BPC1_ARATH; Protein BASIC PENTACYSTEINE1 | ||||
TrEMBL | V7C5Q6 | 0.0 | V7C5Q6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007152627.1 | 0.0 | (Phaseolus vulgaris) | ||||
STRING | XP_007152630.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 2e-87 | basic pentacysteine 2 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G146000.2 |
Entrez Gene | 18633070 | 18633071 |