PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G143500.1
Common NamePHAVU_004G143500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 716aa    MW: 78887.7 Da    PI: 6.634
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G143500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.2e-202580156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +++ +++t++q+++Le++F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  Phvul.004G143500.1 25 KKRYHRHTANQIQRLESMFKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQMK 80
                        678899***********************************************998 PP
2START175.72.8e-552254473206
                         HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
               START   3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                         a + ++e +++ + +ep+W+k +   + ++ d++ + f+++++       ++ea+r+sgvv+m+  +lv  ++d + +W e ++     a 
  Phvul.004G143500.1 225 ASSGMEEMIRLLQTNEPLWMKGAdgrDVLDLDTYERMFPKANGhmknpnVHVEASRDSGVVIMNGLTLVDMFMDPN-KWMELFPtvvtTAR 314
                         5667899****************99999999*******999999********************************.99999999999*** PP

                         EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
               START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                         t+evissg      g lqlm+ elq+lsplv+ R+f+f+Ry++q ++g w+ivdvS d +q+++  ++  R+++lpSg  i++++ng+skv
  Phvul.004G143500.1 315 TIEVISSGmmgghsGCLQLMYEELQVLSPLVStREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQ-FAPQFRSHRLPSGVFIQDLPNGYSKV 404
                         ***************************************************************9.8************************* PP

                         EEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 165 twvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                         tw+ehv++++++p h l+r ++ sg+a+ga++wv tlqr ce+
  Phvul.004G143500.1 405 TWIEHVEVEDKTPvHRLYRNMIYSGIAFGAQRWVTTLQRMCER 447
                         *****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.36E-21582IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-221376IPR009057Homeodomain-like
PROSITE profilePS5007118.1392282IPR001356Homeobox domain
SMARTSM003896.0E-192386IPR001356Homeobox domain
CDDcd000864.12E-192483No hitNo description
PfamPF000469.0E-182580IPR001356Homeobox domain
PROSITE patternPS0002705780IPR017970Homeobox, conserved site
PROSITE profilePS5084849.695214450IPR002913START domain
SuperFamilySSF559611.73E-37215448No hitNo description
CDDcd088754.35E-114218446No hitNo description
SMARTSM002348.0E-44223447IPR002913START domain
PfamPF018523.7E-48227447IPR002913START domain
Gene3DG3DSA:3.30.530.206.0E-10276446IPR023393START-like domain
SuperFamilySSF559614.81E-26468707No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MEYGSGSPGD LHHHHDGSSD SQRRKKRYHR HTANQIQRLE SMFKECPHPD EKQRMQLSRE  60
LGLAPRQIKF WFQNRRTQMK AQHERADNSA LRQENDKIRC ENIAIREALK NVICPSCGGP  120
PINDDCYFDE QKLRLENAQL KEELDRVSSI AAKYIGRPIS QLPPVQPIHI SSLDLSMGSF  180
ASQGLGGPSL DLDLLPGSSS SMPNVPSFQP ACLSDMDKSL MSDIASSGME EMIRLLQTNE  240
PLWMKGADGR DVLDLDTYER MFPKANGHMK NPNVHVEASR DSGVVIMNGL TLVDMFMDPN  300
KWMELFPTVV TTARTIEVIS SGMMGGHSGC LQLMYEELQV LSPLVSTREF YFLRYCQQIE  360
QGLWAIVDVS YDFPQDNQFA PQFRSHRLPS GVFIQDLPNG YSKVTWIEHV EVEDKTPVHR  420
LYRNMIYSGI AFGAQRWVTT LQRMCERIAC LMVTSNSTRD LGGVIPSPEG KRSMMKLAQR  480
MVTNFCASIS ASAGHRWTTL SGSGMNEIGV RVTVHKSTDP GQPNGVVLSA ATTIWLPIPP  540
QTVFNFFKDE KKRPQWDVLS NGNAVQEVAH IANGAHPGNC ISVLRAFNTS QNNMLILQES  600
CVDSSGSLVV YCPVDLPAIN IAMSGEDPSY IPLLPSGFTI SPDGQGEQDG GGASTSTSSG  660
RVMGGSGGSL ITVAFQILVS SLPSAKLNFE SVTTVNSLIG NTVQQIKAAL NCPSS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G143500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152598.10.0hypothetical protein PHAVU_004G143500g
SwissprotQ9FX310.0HDG11_ARATH; Homeobox-leucine zipper protein HDG11
TrEMBLV7C3450.0V7C345_PHAVU; Uncharacterized protein
STRINGXP_007152598.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khosla A, et al.
    HD-Zip Proteins GL2 and HDG11 Have Redundant Functions in Arabidopsis Trichomes, and GL2 Activates a Positive Feedback Loop via MYB23.
    Plant Cell, 2014. 26(5): p. 2184-2200
    [PMID:24824485]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Cai XT,Xu P,Wang Y,Xiang CB
    Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.
    J Integr Plant Biol, 2015. 57(12): p. 1017-30
    [PMID:25752924]
  5. Yu LH, et al.
    Arabidopsis EDT1/HDG11 improves drought and salt tolerance in cotton and poplar and increases cotton yield in the field.
    Plant Biotechnol. J., 2016. 14(1): p. 72-84
    [PMID:25879154]
  6. Zhu Z, et al.
    Overexpression of AtEDT1/HDG11 in Chinese Kale (Brassica oleracea var. alboglabra) Enhances Drought and Osmotic Stress Tolerance.
    Front Plant Sci, 2016. 7: p. 1285
    [PMID:27625663]
  7. Liu Y, et al.
    Overexpression of AtEDT1 promotes root elongation and affects medicinal secondary metabolite biosynthesis in roots of transgenic Salvia miltiorrhiza.
    Protoplasma, 2017. 254(4): p. 1617-1625
    [PMID:27915455]
  8. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  9. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]
  10. Zheng G, et al.
    Over-Expression of Arabidopsis EDT1 Gene Confers Drought Tolerance in Alfalfa (Medicago sativa L.).
    Front Plant Sci, 2017. 8: p. 2125
    [PMID:29326737]