PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G124000.1
Common NamePHAVU_004G124000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 997aa    MW: 111500 Da    PI: 7.7844
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G124000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.61.8e-092372922176
            trihelix  21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                         + rgk ++ + +ev+++++++g++r +k+   kw+n+ ++++k+ e+e++++ e+ 
  Phvul.004G124000.1 237 ITRGKTRADKDKEVAEFLKRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQI 292
                         45789999999**************************************9965544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.510.101.1E-8856982No hitNo description
SuperFamilySSF561123.42E-16857978IPR011009Protein kinase-like domain
CDDcd001801.91E-11859979No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 997 aa     Download sequence    Send to blast
MGDKGDTTKK QQQQQPQSHL HHQHQQQQQQ TQQISSSPKA PREEAITEVR PIHHHQQLSS  60
VVVVTGAPPF ISSPLYVSSG ASSSPYEPQF ETLNPKRPRY SGQWKQLLPS PPSQPKQSQM  120
AMLPTTESSP SPTTHTSSNP QQPQTQTVSS SDTSSSPTHS LPLPSGGSGQ EGSNQEGEQV  180
HQQLRKGKYV SPVWKPNEML WLARAWKEQY QGGGGGGGGG SESSSRAEQQ QQAELGITRG  240
KTRADKDKEV AEFLKRHGVN RDAKTAGTKW DNMLGEFRKV YEWERGGERE QIGKSYFRLS  300
PYERKLHRLP ASFDEDVFEE LAQFMGSRMR SSHGRAGSSF VSGDEARTAL AAARALPPPP  360
RPFKDDEIPL SATTKQLAIT SGSEPFFQGS RGVLLGLDTL LDVSGSSSSK ELRRIGKIRM  420
TWEESVSLWA EEGEIHRGRV RLQSSSFLNA DELTCFDDAM VPCPMEYFED GPLKGFSVDR  480
FVSGQQVKVF GRRKSSPASD SSGFAERVQL PSKALPIRSI ATLDFRDPTE YYMECLLRAS  540
PQTLPSLYEL KRHLQEPPPE DLRFPLRRDV YEELPQGKEL FFTTTPEPLD CRTIMYDIVG  600
PIIRTSNPSL SLATSSSRDS FIPLWDECIN RVIQKFCPEE LVLIRKPTSP PPESTTQLQD  660
QWPNVTGFVN NYCLWRGEET HQLKESQPNP STTLVGKLLW TYMDLPYILG YHAVANTVTF  720
CALSRSQDGI INRTDLHEVN LTTPVEKLKA LVPCFRIGLL LALLSKRCAS ISNCKGFTYS  780
DFERVCYGNG VVTEVTPTTC MRVFMEKRKW MAVKEVYEIL DHRIPHAEVL VGFSERELAL  840
SFKPRGCRVK PGNCEELVEA LKFVTKAMVA LHDLSFMHRD LKWEKVMRRR DREEWFVCGF  900
DEAAGAPELK GHVSGARGSH APEMERGLHG VKVDVWGVGN LIRTCGLGGV PKMLRELQNR  960
CMEQNPEQRP TAADCYHHLL QLQSSLSAAA GGVVMM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G124000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152366.10.0hypothetical protein PHAVU_004G124000g
TrEMBLV7C5010.0V7C501_PHAVU; Uncharacterized protein
STRINGXP_007152366.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118572831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-07Trihelix family protein