PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G090900.1 | ||||||||
Common Name | PHAVU_004G090900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 970aa MW: 109266 Da PI: 5.1085 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.7e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Phvul.004G090900.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Phvul.004G090900.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.1E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 7.87E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 8.27E-21 | 33 | 106 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.73E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 5.2E-62 | 406 | 652 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 970 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR 180 LASLQKKREL KAAGIDIRQR KRKRKGIDYN AEIPFEKRPP PGFFDVADED RPVEQPKFPT 240 TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILHA NKLNDPETVR KRSKLMLPPP 300 QISDQELDEI AKLGYASDLA GSQELAEGSG ATRALLANYA QTPGQGVTPL RTPQRTPAGK 360 GDAIMMEAEN LARLRESQTP LLGGENPELH PSDFSGVTPK KKDIQTPNPM LTPSATPGGI 420 TPRIGMTPTR DGFSFSMTPK GTPLRDELHI NEDMNMHDST KHELQRQADI RRSLRSGLGS 480 LPQPTNEYQI VMEPVTEDAE EPEEKIEEDM SDRIAREKAE EEARQQALLR KRSKVLQREL 540 PRPPAASLEL IRNSLMRTDG DKSSFVPPTS IEQADEMIRK ELLTLLEHDN AKYPLDDKVN 600 KEKKKGVKRS ADVSAVPVIE DFEEDEMKDA DKLIKEEVQY LCAAMGHENE PLDEFIEAHR 660 TCLHDLTYFP TRNAYGLSSV AGNMEKLAAL QNEFENARNK LDDDKEKMVR LEKKVTVITQ 720 GYEMRAKKSI WPQIEATFKQ MDIAATELEC FKALHKQEQL AASQRINNLW SEVQKQKELE 780 KTLQNRYGSL VEELEKMQNT INQCRLKAQQ QKEIEANNAH AEANESKADE TDVLDTESYK 840 VVPHSVEDGN ALAVTVESSH DATADQQEEI VQDGSTSSPS QDMNVDPDKM HTIHDTDVKL 900 AKASPAAENV VEIVEGTSPT DGNTDNGENV SEMGASMEIN SRNHDVVANA VNTRESSMEE 960 TSAVTEETN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 801 | 3 | 802 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 801 | 3 | 802 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 801 | 3 | 802 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 801 | 3 | 802 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 801 | 3 | 802 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 801 | 3 | 802 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 801 | 3 | 802 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 801 | 3 | 802 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 801 | 3 | 802 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 801 | 3 | 802 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 801 | 3 | 802 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 801 | 3 | 802 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KKRELKAAGIDIRQRKRKRK |
2 | 199 | 204 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G090900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151972.1 | 0.0 | hypothetical protein PHAVU_004G090900g | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | V7C4X0 | 0.0 | V7C4X0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007151972.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4072 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G090900.1 |
Entrez Gene | 18632493 |
Publications ? help Back to Top | |||
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