PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G081200.1 | ||||||||
Common Name | PHAVU_004G081200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 318aa MW: 36018.2 Da PI: 5.546 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.3e-17 | 26 | 75 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr++ +g+WvAeI++ + ++ r +lg++ taeeAa+a+++a+ l+g Phvul.004G081200.1 26 KYVGVRQRA-SGKWVAEIKETT---QKIRMWLGTYETAEEAARAYDEAACLLRG 75 8*****999.7*******9932...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.47E-19 | 26 | 83 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.335 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-35 | 26 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-27 | 26 | 82 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-12 | 26 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-7 | 27 | 38 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.55E-30 | 27 | 82 | No hit | No description |
PRINTS | PR00367 | 1.6E-7 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MEIQFQHPKQ HLRPKIKGKN NKSKNKYVGV RQRASGKWVA EIKETTQKIR MWLGTYETAE 60 EAARAYDEAA CLLRGSNTRT NFITRVSSDS PLASRIQKLL NNRKDIKEQE QDVENCATRV 120 NTNQQELNLA EGVTTLQDEK LRFESSLEEV SMFSVQPCLQ QDCRQKKIYV KDQKKKRVTS 180 TTRSASASAS SSTNTSNSDT CVNSLSSETT TQNTQLFDDA YRPDLSNFME SESGSQENPS 240 WGSEPFCDHF PFGQVMDLEN LPDIAGLELP EFERMKVERQ ISASLYAMNG VQEYMNTVQD 300 SNNEAIWNLT PLCSFLC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs). Binds to the GCC box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Involved in early stages of root nodule development. Functions redundantly with ERN1. Is essential with ERN1 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241, ECO:0000269|PubMed:27208242}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G081200.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Nod factors in root hairs. {ECO:0000269|PubMed:17827349}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151856.1 | 0.0 | hypothetical protein PHAVU_004G081200g | ||||
Swissprot | A9Y0K8 | 6e-85 | ERN2_MEDTR; Ethylene-responsive transcription factor ERN2 | ||||
TrEMBL | V7C3I2 | 0.0 | V7C3I2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007151856.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18699 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-21 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G081200.1 |
Entrez Gene | 18632392 |
Publications ? help Back to Top | |||
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