PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G072100.1
Common NamePHAVU_004G072100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 406aa    MW: 45379.8 Da    PI: 9.5894
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G072100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP147.31.1e-451002642133
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec.eaessss 80 
                         ++kkdrhski+T++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL++++k+aikel+++           s+ss+sec + + ++ 
  Phvul.004G072100.1 100 PAKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSknstnseegakSFSSSSECdD-DCEVI 189
                         68**************************************************************887777777776666677742.33333 PP

                 TCP  81 sasnsssg.....................kaaksaa.kskksqksaasalnlakesrakarararertrekmrik 133
                         s+  ++++                     k+ +s a  +k + k++++  +++kesr+karararert++k + +
  Phvul.004G072100.1 190 SEIRQKQQlitgdaatphnlqhgldssdnKSPTSLAgREKMKLKRTQKEPAKMKESREKARARARERTSNKIMCN 264
                         333222334567777788888888888874444444455555566666688999************999985443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-45101261IPR005333Transcription factor, TCP
PROSITE profilePS5136935.921102160IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.607243260IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MFPYSSNPYP SFPSSSSSFH PFPFLNLENA SASNTLLHDP LSVPYLPTHH NPPNIQEALS  60
NLPVTDHNCG GGGSAMTKPD PNGGGGAPHY GLSCFLTKKP AKKDRHSKIY TSQGLRDRRV  120
RLSIEIARKF FDLQDMLGFD KASNTLEWLF NKSKRAIKEL ARSKNSTNSE EGAKSFSSSS  180
ECDDDCEVIS EIRQKQQLIT GDAATPHNLQ HGLDSSDNKS PTSLAGREKM KLKRTQKEPA  240
KMKESREKAR ARARERTSNK IMCNVNSNTG RVQQDMKKKY PAIENNHSQF MHQSRSPTHP  300
HHLVGSEAPR DDFNVIEESI VIKRKLKPSL MSYSHHHHQN LMIPKEPPCF NNNSEYHPFS  360
NLSPNWDANG STGRSNFCAI ASMNPSTGLQ IFGKSWEECT NPRLH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G072100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151756.10.0hypothetical protein PHAVU_004G072100g
TrEMBLV7C3940.0V7C394_PHAVU; Uncharacterized protein
STRINGXP_007151756.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-29TCP family protein