PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G068900.1 | ||||||||
Common Name | PHAVU_004G068900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 344aa MW: 37981.9 Da PI: 5.9051 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.6e-19 | 95 | 144 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g Phvul.004G068900.1 95 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 144 588******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.3E-34 | 95 | 158 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 95 | 151 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.84E-31 | 95 | 151 | No hit | No description |
PROSITE profile | PS51032 | 21.14 | 95 | 152 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-21 | 95 | 152 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.4E-12 | 96 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-8 | 96 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-8 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MFYLVDFPTP KQKLKKLEES LQTITNLACQ VPTSFISIVK FPFILHSSLQ QIVHFIHVKN 60 LSMSSYKSSP SSSKTKKKQT TTQDHQQHET VWGGRYLGVR RRPWGRYAAE IRDPSTKERH 120 WLGTFDTAEE AALAYDRAAR SMRGSRARTN FVYPDTPAGS SVTTILSPDE QTQTQIQIHQ 180 VQEDLSSLLN PNLFSQPDPN PPFSLGGYSG VTNTPTFSST EVVSSGGYNY NYGYTEGGSN 240 VEDSHSHSHF NLFDDGETQL PPLPPDITSS MAYETGHGFY GDGVGFSDPS FGLTDTGSGY 300 PFPGFESGDY VVHSPLFSAM PPVSDNVAME GFDLGNSSYF FRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-22 | 93 | 151 | 3 | 62 | ATERF1 |
3gcc_A | 9e-22 | 93 | 151 | 3 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G068900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151705.1 | 0.0 | hypothetical protein PHAVU_004G068900g | ||||
TrEMBL | V7C0Q3 | 0.0 | V7C0Q3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007151705.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 1e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G068900.1 |
Entrez Gene | 18632264 |