PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G061000.1
Common NamePHAVU_004G061000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 277aa    MW: 31409.5 Da    PI: 4.6557
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G061000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.52.6e-11951143
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        k i+n+  r++tf +R+ g++KK +E S  C+ e ++i+f  +
  Phvul.004G061000.1  9 KHISNEKFRKTTFLRRKRGLMKKISEFSKKCGGEHCLIVFDDD 51
                        689************************************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.29E-14177IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-8161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.049152IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-5323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-121152IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MGRARITLKH ISNEKFRKTT FLRRKRGLMK KISEFSKKCG GEHCLIVFDD DNGDVGPVTS  60
PQNPVEVHSM IQKYYESQIK NERPRRTYGI EEFLENRKNM IEAEISRVDK QISSIKYPTW  120
DQSMIIMEED QLRAFCVHVD AKIEACDRGI KLLKDQPQGF GSNMAKENAT ATTSHPNQGN  180
YLQSISQSEA LLDYFSSPVD VPLNSTNELS DLEFEELIMG LNSCDWPYQT CDDLVGCSNE  240
VDECVLPSIC VEYQGGADLY ALPPSLDVID YSNMFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G061000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151604.10.0hypothetical protein PHAVU_004G061000g
TrEMBLV7C2K50.0V7C2K5_PHAVU; Uncharacterized protein
STRINGXP_007151604.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-12M-type_MADS family protein