PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.004G058200.1

Common Name

PHAVU_004G058200g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 812aa MW: 93563.8 Da PI: 6.7791

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.004G058200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.6	7.6e-22	140	226	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+ YA + GFsvrk+ +ks+ ng +++r+++C ++g+r +++ + r+ ++etrtgC a++++ ++ +gk++vt++e+eHnHe++ Phvul.004G058200.1 140 CYSMYAVQKGFSVRKDFVNKSRINGAVVSRRYTCHRQGYRPNKNGT--FLRKFQQETRTGCLAHMTIARQPNGKFQVTHFETEHNHEFV 226 7*************************************998877..99999********************************97 PP
2	FAR1	89.9	3.4e-28	273	361	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+r++++++ + +r+r+ tr+gC a+l+++++ dg+++vt++e++HnHel+ Phvul.004G058200.1 273 EFYNTYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDRRD-MNPKRPRKDTRIGCLAQLVISRQPDGRYHVTHFEEKHNHELV 361 6*****************************************999.999***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-20	140	226	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.6E-25	273	361	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.7E-23	476	569	IPR018289	MULE transposase domain
Pfam	PF04434	4.7E-4	745	791	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.545	756	792	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.6E-4	767	794	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 812 aa Download sequence Send to blast
MEGTEPDIER QPLEDAEKEC PISAEVVIDM GQESQTRNPS DSSVADTIKV IDTGNECTDP 60 NVCPVDHSHM EINDECQTSN IFHVDKFHND NVSSGQLCEN PCATSVNVSM PSTDVKNENE 120 IYVAPKIGME FESEDNAYKC YSMYAVQKGF SVRKDFVNKS RINGAVVSRR YTCHRQGYRP 180 NKNGTFLRKF QQETRTGCLA HMTIARQPNG KFQVTHFETE HNHEFVTPCT AHMLPSQKRL 240 SFAQAIEANL TVSGLDEVPK LGMGFDSDEH AYEFYNTYAG RVGFSVRKDY VNRSKIDGAV 300 ASRRFTCFRE GFRQKDRRDM NPKRPRKDTR IGCLAQLVIS RQPDGRYHVT HFEEKHNHEL 360 VAACRVHLLR SQKGLTATQI ENLVDGSNLL PTSTSETNCK ARLGSDPIGR DYKLPFKCTI 420 NIKEGEIEKI KHHFRSKQSK NPSFFYAFQL DADDQITNIF WADTKMMVDY TDFGDVVCFD 480 SSYKYYKDSR PFVPFLGINN HQQMTIFGAA LLYNESVESL KWLFVVFLQA MSGRKPKTIL 540 TDLDVVTAEA LNAILPETNH RVCVWHVYQD ALKHLSHVSA GSDSFVNDLR SCLFHHEEED 600 YFVNEWNALM DNYNLWENEW LQQIFGSRDR WAIAYRRQFF CADIESMLLR ENLSGNLKRY 660 LKHDSDILPL FKYLVKVVTD WHYKELDANF DMSQRMPPLL GNIITLKHAS APYTPKIFEL 720 FQKEYEACLN LVIKHCTENG SLYYYKVSVY EQAREYSVTF DSSNETISCC CMKFEYVGIL 780 CCHALKVLDY VNIRIVPSRY ILKRWTKDAR V*

Sequence ? help Back to Top

Protein Sequence Length: 812 aa Download sequence Send to blast

MEGTEPDIER QPLEDAEKEC PISAEVVIDM GQESQTRNPS DSSVADTIKV IDTGNECTDP  60
NVCPVDHSHM EINDECQTSN IFHVDKFHND NVSSGQLCEN PCATSVNVSM PSTDVKNENE  120
IYVAPKIGME FESEDNAYKC YSMYAVQKGF SVRKDFVNKS RINGAVVSRR YTCHRQGYRP  180
NKNGTFLRKF QQETRTGCLA HMTIARQPNG KFQVTHFETE HNHEFVTPCT AHMLPSQKRL  240
SFAQAIEANL TVSGLDEVPK LGMGFDSDEH AYEFYNTYAG RVGFSVRKDY VNRSKIDGAV  300
ASRRFTCFRE GFRQKDRRDM NPKRPRKDTR IGCLAQLVIS RQPDGRYHVT HFEEKHNHEL  360
VAACRVHLLR SQKGLTATQI ENLVDGSNLL PTSTSETNCK ARLGSDPIGR DYKLPFKCTI  420
NIKEGEIEKI KHHFRSKQSK NPSFFYAFQL DADDQITNIF WADTKMMVDY TDFGDVVCFD  480
SSYKYYKDSR PFVPFLGINN HQQMTIFGAA LLYNESVESL KWLFVVFLQA MSGRKPKTIL  540
TDLDVVTAEA LNAILPETNH RVCVWHVYQD ALKHLSHVSA GSDSFVNDLR SCLFHHEEED  600
YFVNEWNALM DNYNLWENEW LQQIFGSRDR WAIAYRRQFF CADIESMLLR ENLSGNLKRY  660
LKHDSDILPL FKYLVKVVTD WHYKELDANF DMSQRMPPLL GNIITLKHAS APYTPKIFEL  720
FQKEYEACLN LVIKHCTENG SLYYYKVSVY EQAREYSVTF DSSNETISCC CMKFEYVGIL  780
CCHALKVLDY VNIRIVPSRY ILKRWTKDAR V*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.004G058200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	0.0	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007151573.1	0.0	hypothetical protein PHAVU_004G058200g
TrEMBL	V7C060	0.0	V7C060_PHAVU; Uncharacterized protein
STRING	XP_007151573.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-106	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Phvul.004G058200.1
Entrez Gene	18632151