PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G057800.1
Common NamePHAVU_004G057800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 276aa    MW: 31634.6 Da    PI: 6.0591
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G057800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-131461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT eEd +l + +   G  +W+++++  g+ R++k+c++rw +yl
  Phvul.004G057800.1 14 RGPWTIEEDHKLMNFILNNGIQCWRAVPKLAGLLRCGKSCRLRWINYL 61
                        89******************************99************97 PP
2Myb_DNA-binding49.68.9e-1667110146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg +T+ E++++++++  +G++ W++Ia++++ gRt++++k++w++
  Phvul.004G057800.1  67 RGGFTEVEEDQIIQLHSCFGNR-WSKIASHFP-GRTDNEIKNHWNT 110
                         788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.207961IPR017930Myb domain
SuperFamilySSF466894.03E-2811108IPR009057Homeodomain-like
SMARTSM007173.0E-61363IPR001005SANT/Myb domain
PfamPF002497.5E-121461IPR001005SANT/Myb domain
CDDcd001672.68E-41661No hitNo description
PROSITE profilePS5129423.54962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-2565116IPR009057Homeodomain-like
SMARTSM007175.1E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1467110IPR001005SANT/Myb domain
CDDcd001673.12E-1070110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIQCWRAV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TEVEEDQIIQ LHSCFGNRWS KIASHFPGRT DNEIKNHWNT KIKKRLKLLG  120
LDPFTLMPIE QKEKSGADKV KTDMQPKSTS NGSDQGVENN KSLDMHATVE EPKTEEKMEE  180
SRVKWDDTTG FFNNYEVLCS QLDLGSWMSQ ETKASTSSYC SSSFSLDDSS NFSVDESSYL  240
QENSLQQWVE GLDSILSWDN FSPLQKDFPF LENRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G057800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151568.10.0hypothetical protein PHAVU_004G057800g
SwissprotP813943e-75MYB15_ANTMA; Myb-related protein 315
TrEMBLV7C0550.0V7C055_PHAVU; Uncharacterized protein
STRINGXP_007151568.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.14e-81myb domain protein 40
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]