PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G054000.1
Common NamePHAVU_004G054000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Dof
Protein Properties Length: 451aa    MW: 49100.7 Da    PI: 6.7415
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G054000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.2e-39110169261
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                         ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  Phvul.004G054000.1 110 PDKILHCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHL 169
                         7899******************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-28107167IPR003851Zinc finger, Dof-type
PfamPF027015.7E-32112168IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.463114168IPR003851Zinc finger, Dof-type
PROSITE patternPS013610116152IPR003851Zinc finger, Dof-type
SuperFamilySSF535906.28E-5141269IPR001910Inosine/uridine-preferring nucleoside hydrolase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSNKDPGIRL FGRKIPLPES QIPASSQMGY KIQANSATMN ACGGLKKKEV EIPYTENSEQ  60
PQNYSDSRDS EQEFPHNNNQ QENVSKVNTK TVENNTESSS TDEDKIFKKP DKILHCPRCN  120
SLDTKFCYFN NYNVNQPRHF CKNCQRYWTA GGTMRNVPVG AGRRKNKHLA SQYQHIIVSC  180
DGVPTTNDSS CHQLVTTLQS AAVFRSSTDN EKGEEEVSLC ASASMTNACT ARNTLTEPAA  240
SKPLQCYPAP PWIIPWNQDW NNAASTASVQ PSSLHMCNPY SADPASMQWC PTPMMAVPTI  300
YPPSFPLQFV PGSYWGGQPM WGGGTGAVSM GFNACLSPTS STSNSCCSGN GSPTLGKHTR  360
DNNVSTDEEK SDMCVLVPTT LRIDDPNEAA KCPTFASSGL NPENQQCVAE GTISKRAKPR  420
EDKECVLGVS QILEANPAAI SRAHAFQEGI *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G054000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151521.10.0hypothetical protein PHAVU_004G054000g
TrEMBLV7C2J30.0V7C2J3_PHAVU; Uncharacterized protein
STRINGXP_007151521.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.29e-44cycling DOF factor 2