PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G053500.1
Common NamePHAVU_004G053500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 377aa    MW: 41433.8 Da    PI: 8.3094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G053500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-17107152147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  Phvul.004G053500.1 107 RGHWRPAEDVKLKELVAQFGAQNWNSIAEHLP-GRSGKSCRLRWFNQ 152
                         899*****************************.***********996 PP
2Myb_DNA-binding55.71.2e-17159202146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r+++++eE+e+l++a+k +G++ W+ I+r ++ gRt++ +k++w+ 
  Phvul.004G053500.1 159 RKAFSEEEEERLLNAHKVYGNK-WAMISRLFP-GRTDNAVKNHWHV 202
                         789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.586102153IPR017930Myb domain
SMARTSM007171.0E-14106155IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-28107200IPR009057Homeodomain-like
PfamPF002497.7E-17107152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-26108160IPR009057Homeodomain-like
CDDcd001676.63E-14110151No hitNo description
PROSITE profilePS5129425.356154208IPR017930Myb domain
SMARTSM007171.1E-14158206IPR001005SANT/Myb domain
PfamPF002494.4E-14159201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-20161206IPR009057Homeodomain-like
CDDcd001678.64E-12161201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSDSLHFRNG GCGFSAEMNV FPSPPVTVIG LHSFNILGVM GHVEGKKSES SDIPFQILNP  60
SVIHASQEGE ASFGVEAMSL SLKPGEELEA DSYSATGKIR HTKLCARGHW RPAEDVKLKE  120
LVAQFGAQNW NSIAEHLPGR SGKSCRLRWF NQLDPRINRK AFSEEEEERL LNAHKVYGNK  180
WAMISRLFPG RTDNAVKNHW HVIMARRQRE KSCVYKRRKP TFQILPPKDL DLTLPMNGSS  240
ESTISSTIID ESASTGTNLS FTPSSAKPTP LPFHNPCPVQ NLQAFGALMD LSGESRTTAR  300
NGSFNKHIGA WKGSCEAGHM GRLMGVDQSH CSDSNSSEIS VSESVATNKI TNLSMYEKSD  360
NRPNMLFIDF LGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-331072077107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205219RRQREKSCVYKRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G053500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-180AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151515.10.0hypothetical protein PHAVU_004G053500g
TrEMBLV7C0260.0V7C026_PHAVU; Uncharacterized protein
STRINGXP_007151515.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-66myb domain protein 105