PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G052300.1 | ||||||||
Common Name | PHAVU_004G052300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | GeBP | ||||||||
Protein Properties | Length: 399aa MW: 44396.1 Da PI: 10.0515 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 98.4 | 6.6e-31 | 173 | 268 | 1 | 96 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 klfqr+ws eDe+ +L+G+++f + tg++p+ daf++f+kks+++++s+ ql eKirr+Kk+ k++ +++++gkep++ k+hdq fe+ Phvul.004G052300.1 173 KLFQRIWSPEDEVGILKGILEFISMTGQDPYRYADAFHSFIKKSLHVEFSSLQLKEKIRRMKKRCKTHLERQAEGKEPRLLKPHDQTLFEF 263 579**************************************************************************************** PP DUF573 92 skkiW 96 skkiW Phvul.004G052300.1 264 SKKIW 268 ***** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.8E-28 | 175 | 268 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MPQKRKKRPP PPIEDPPTAS SSESEEGDDR PRSSQPHAAA AAPPPVAAAQ VSSSEDEDDS 60 SEEDKKQRST LPASANPPSN AHPKSSFSES DTDSEPTRAK SKSKPKPKSK PTDQLQPQDQ 120 AQRSSAQVKP VSKRSIHKTD PKRLKKKRAD APSSSVANDA TEEDGNKSGS QAKLFQRIWS 180 PEDEVGILKG ILEFISMTGQ DPYRYADAFH SFIKKSLHVE FSSLQLKEKI RRMKKRCKTH 240 LERQAEGKEP RLLKPHDQTL FEFSKKIWID WPNGLVEKPK FNGKGRKPKK KESATTSVPK 300 AKDNVLPQPS APLLALPAPG EYDSGDVSLL YRKISCFEEL DADEMKRGLT LIGESKRKEL 360 ERRWNMLVHS EMELLANRSL LIGEQIKLIS EALQSSSN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G052300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151503.1 | 0.0 | hypothetical protein PHAVU_004G052300g | ||||
TrEMBL | V7BZZ0 | 0.0 | V7BZZ0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007151503.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 2e-20 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G052300.1 |
Entrez Gene | 18632089 |