PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G046600.1
Common NamePHAVU_004G046600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CO-like
Protein Properties Length: 354aa    MW: 39758.4 Da    PI: 6.2724
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G046600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.81.4e-051849435
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                        r+C+++ + + + +C+ ++ +lC +C    H 
  Phvul.004G046600.1 18 RVCDTCRSAPCIVYCHADSAYLCSSCDARVHA 49
                        68*************************99995 PP
2CCT70.35e-24275318144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea++lRY+eK+ktRkFeKkirY+sRKa+Ae+RpR+KGrF+k++
  Phvul.004G046600.1 275 REARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRT 318
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-41562IPR000315B-box-type zinc finger
PROSITE profilePS501199.6411558IPR000315B-box-type zinc finger
CDDcd000219.82E-71854No hitNo description
CDDcd000210.004986092No hitNo description
PfamPF062037.8E-18275317IPR010402CCT domain
PROSITE profilePS5101716.827275317IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MLKEGTNNVG GSSSTWSRVC DTCRSAPCIV YCHADSAYLC SSCDARVHAA NRVASRHEPF  60
LCKVDAASLC SSCDAEIHSA NPLASRHHRF PVLLILGPLL GEPDHEPEHR FVNVVEEEEE  120
EFSYEYDDEI EAASWLLPHP VKGNEEEENG FMYGIEYLEN LMDCNSCGHN NNQFSNVFQH  180
QQNYNTVPQN YAVVPVQVLQ QSQHFQPGLE FDSSKAGFSY DGSLSQSVSV SSMEVGVVPE  240
STISDISVSY SKSPIGTSEL FPPLPMPSHL TPMDREARVL RYREKKKTRK FEKKIRYASR  300
KAYAETRPRI KGRFAKRTDV EAEVDQMLSK TLFNEVGGTI FHLSRNGKKR SYQ*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G046600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151441.10.0hypothetical protein PHAVU_004G046600g
SwissprotQ965021e-101COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLV7C2B30.0V7C2B3_PHAVU; Uncharacterized protein
STRINGXP_007151441.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.15e-76CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]