PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G046000.1 | ||||||||
Common Name | PHAVU_004G046000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 39192.7 Da PI: 5.955 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.6 | 8.8e-16 | 36 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++ G g+W+ Iar g+ R++k+c++rw +yl Phvul.004G046000.1 36 KGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYL 83 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 89 | 133 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E+el+++++ lG++ W+ Ia++++ gRt++++k++w++ Phvul.004G046000.1 89 RGAFSPQEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 133 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.4 | 31 | 83 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.09E-28 | 34 | 130 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-13 | 35 | 85 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 36 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 37 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.72E-11 | 39 | 83 | No hit | No description |
PROSITE profile | PS51294 | 26.126 | 84 | 138 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 88 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 89 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-26 | 91 | 138 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.24E-12 | 91 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MRKPDIMGKD KLNTSSSTTT TTINTTNNST KSKLRKGLWS PEEDEKLIRY MITKGQGCWS 60 DIARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEELI IHLHSILGNR WSQIAARLPG 120 RTDNEIKNFW NSTLKKRLKM SNNNNTTSSP NNSDSSDPRD VMGGIMPMNE HDLMTMCMDS 180 SSSTSSSSMH SMQANMALTD QFDPFPLLSN RYDMTTGAAG FLDNMAACLT QVGMADHDDG 240 VVHGDYGALE PNKMGLESDF SLPPLESRSN IEDNSTTPID VKTHNNNHFK NSCFNNTDLH 300 IQTSNNVVAE DMFGFGNHHG QGENFRMGEW DFEGLMQDMS YFPSLDFQV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-28 | 34 | 138 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 139 | LKKRLKM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G046000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151435.1 | 0.0 | hypothetical protein PHAVU_004G046000g | ||||
Swissprot | Q9C6U1 | 5e-82 | MYB83_ARATH; Transcription factor MYB83 | ||||
TrEMBL | V7BZV2 | 0.0 | V7BZV2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007151435.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08500.1 | 3e-73 | myb domain protein 83 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G046000.1 |
Entrez Gene | 18632024 |
Publications ? help Back to Top | |||
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