PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G037700.2
Common NamePHAVU_004G037700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 327aa    MW: 36150.5 Da    PI: 9.4466
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G037700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.38.3e-32481602109
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsss 87 
                          g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++      ++ + +s++ + +
  Phvul.004G037700.2  48 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIHLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIPPGQNSntlwkPKSGEIVSDKPNWI 138
                         689*************************************************************777774444456323333333333333 PP

                 TCP  88 gkaaksaakskksqksaasaln 109
                         ++++ +++ +k ++++++   n
  Phvul.004G037700.2 139 NRSEDENNATKTNNNNSNDCDN 160
                         3333333333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.96650108IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-2950162IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MINSRKEADF PLKQEGLSSS DHEKAKASSS SQWLKLKDPR IVRVSRAFGG KDRHSKVCTV  60
RGLRDRRVRL SVPTAIHLYD LQDRLGLSQP SKVVDWLLNA AKHEIDELPP LPIPPGQNSN  120
TLWKPKSGEI VSDKPNWINR SEDENNATKT NNNNSNDCDN KHCHGAHVFQ NNLLPRPNHP  180
SFLGLMNTMP SLGYQWEPNS GDVPQLGNHG FFNQTDIHSI NVVPISSTLV STGSTSPQIL  240
VCPSGATQPY FSSHVAAMEM NARQINHYQM LTSGSQNLLA NSLTPSQQLM SSQSGKVPFS  300
LVRPKLFHSP NSTESHPSKD QDFPSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1855109155Putative transcription factor PCF6
5zkt_B8e-1855109155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G037700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151336.10.0hypothetical protein PHAVU_004G037700g
TrEMBLV7C2070.0V7C207_PHAVU; Uncharacterized protein
STRINGXP_007151337.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.17e-39plastid transcription factor 1