PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G037700.1
Common NamePHAVU_004G037700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 351aa    MW: 38626.2 Da    PI: 8.7299
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G037700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.28.6e-32481792104
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..........eaesssssa 82 
                          g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++          ++++ s ++
  Phvul.004G037700.1  48 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIHLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTlgyhpslvacNEVNTSPEG 138
                         689*************************************************************777775554433222211333333333 PP

                 TCP  83 snsssg...................kaaksaakskksqksa 104
                         s ++s+                   +++ +++ +k +++++
  Phvul.004G037700.1 139 SGQNSNtlwkpksgeivsdkpnwinRSEDENNATKTNNNNS 179
                         33333345555555555554444432222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.96650108IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-2850185IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MINSRKEADF PLKQEGLSSS DHEKAKASSS SQWLKLKDPR IVRVSRAFGG KDRHSKVCTV  60
RGLRDRRVRL SVPTAIHLYD LQDRLGLSQP SKVVDWLLNA AKHEIDELPP LPIPPGNFTL  120
GYHPSLVACN EVNTSPEGSG QNSNTLWKPK SGEIVSDKPN WINRSEDENN ATKTNNNNSN  180
DCDNKHCHGA HVFQNNLLPR PNHPSFLGLM NTMPSLGYQW EPNSGDVPQL GNHGFFNQTD  240
IHSINVVPIS STLVSTGSTS PQILVCPSGA TQPYFSSHVA AMEMNARQIN HYQMLTSGSQ  300
NLLANSLTPS QQLMSSQSGK VPFSLVRPKL FHSPNSTESH PSKDQDFPSK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1855109155Putative transcription factor PCF6
5zkt_B5e-1855109155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G037700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151337.10.0hypothetical protein PHAVU_004G037700g
TrEMBLV7C3640.0V7C364_PHAVU; Uncharacterized protein
STRINGXP_007151337.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-38plastid transcription factor 1