PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G031900.1 | ||||||||
Common Name | PHAVU_004G031900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 405aa MW: 45460.3 Da PI: 4.4415 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.6e-19 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Phvul.004G031900.1 42 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 91 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.55E-32 | 41 | 98 | No hit | No description |
SMART | SM00380 | 2.0E-35 | 42 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 42 | 99 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-13 | 42 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.86E-19 | 42 | 99 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-27 | 42 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-8 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-8 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MARKRKGGEV VEEREICEGS MAWDEMMKQA AALGGVQRAR KRFVGVRQRP SGRWVAEIKD 60 TIQKIRVWLG TFDTAEEAAR AYDEAACLLR GANTRTNFWP CSQSSTSPAL SSKITNLLLQ 120 RLKERNNNNN CSSSSTSTSL LINHQHMQQE VDAYGDGSTQ FSIDQFTDFL NDPEDYSASN 180 NDFINNTAQI DYITSSFESC LTEKDGGTKV DVQYKTNIVT PQTSSNDSNS GVEDSEEEGT 240 DTNFDVHDFR FLDNIAPPSY YSPFEMAEEM EEPVEAENYG GDEPSMLRAV MKRMTYERKF 300 SASLYAFNGI PECLKLKLES GNMKGRGITD QLTSLQMACS KNRLKKNEEV KEYMEAMDGK 360 QEEHHQQTTT DMDSSSVDGE LLLWNSLDLP PICFVNLLEN GSFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 35 | 98 | 7 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G031900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151265.1 | 0.0 | hypothetical protein PHAVU_004G031900g | ||||
TrEMBL | V7BZF0 | 0.0 | V7BZF0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007151265.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 6e-22 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G031900.1 |
Entrez Gene | 18631875 |