PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.004G028600.1 | ||||||||
Common Name | PHAVU_004G028600g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 344aa MW: 37001.9 Da PI: 7.648 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.9 | 1e-32 | 66 | 123 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 v+YkeClkNh aslGgha+DGCgEfmps+ ++ +++++kCaACgCHRnFHRre+ee Phvul.004G028600.1 66 VVVYKECLKNHVASLGGHALDGCGEFMPSPAATpDDPSSIKCAACGCHRNFHRREPEE 123 689***************************999999******************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.0E-28 | 67 | 121 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-17 | 69 | 129 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.452 | 69 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-29 | 69 | 120 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.24E-19 | 187 | 258 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-29 | 188 | 259 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.1E-26 | 197 | 254 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence Send to blast |
MEIITPTPPP TTVTATNAAA KSPELDIETP TRIHQAAGNS NPSPKPVSFS NGVLKRHHAN 60 HRAAAVVVYK ECLKNHVASL GGHALDGCGE FMPSPAATPD DPSSIKCAAC GCHRNFHRRE 120 PEEPPISPAT HHVLEYQPHH RHHPPPPPPH RSPNSSSPPP ISSYPSAPHM LLALSSGGGL 180 SVAPENTAAP AMAHHSRKRF RTKFSQEQKE KMHEFADKVG WKMQKRDENM VMEFCNEIGV 240 DRGVLKVWMH NNKNTLAKKD NLNGNSAIVS ANGINHVANV NKATVIRSNV NGLEHEHGAG 300 INGNTNNDHD HDHNHNLSSS HDVNEYENDS GTNGGGTNGS SSS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-21 | 196 | 255 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.004G028600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151228.1 | 0.0 | hypothetical protein PHAVU_004G028600g | ||||
Swissprot | Q9LXG0 | 2e-73 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | V7BZ75 | 0.0 | V7BZ75_PHAVU; Uncharacterized protein | ||||
STRING | XP_007151228.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1979 | 31 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28920.1 | 2e-66 | homeobox protein 34 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.004G028600.1 |
Entrez Gene | 18631841 |
Publications ? help Back to Top | |||
---|---|---|---|
|