PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G011400.1
Common NamePHAVU_004G011400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 293aa    MW: 33271.2 Da    PI: 9.6361
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G011400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.2e-17132176247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         + WT+eEd  lv+ v+q+G+  W+ Ia+ ++ gR +kqc++rw++ 
  Phvul.004G011400.1 132 QYWTPEEDRVLVEMVNQFGPTKWSQIAKALQ-GRIGKQCRERWNNQ 176
                         57*****************************.************96 PP
2Myb_DNA-binding57.92.3e-18183225145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         rg W+ eEd +l+++++++G++ W++Ia+++g gRt++ +k++w+
  Phvul.004G011400.1 183 RGTWSLEEDMILIKGHQEFGNK-WSKIAKKLG-GRTENAVKNHWN 225
                         89********************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.533126181IPR017930Myb domain
SMARTSM007175.9E-16130179IPR001005SANT/Myb domain
SuperFamilySSF466892.7E-30130224IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-27133184IPR009057Homeodomain-like
PfamPF139212.2E-17134191No hitNo description
CDDcd001675.98E-14134175No hitNo description
PROSITE profilePS5129421.102182232IPR017930Myb domain
SMARTSM007173.7E-17182230IPR001005SANT/Myb domain
CDDcd001675.87E-13185225No hitNo description
Gene3DG3DSA:1.10.10.601.4E-22185230IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MFHQTKTFHL FHFHPMNMAT CIPISTMEGL SNPTTPLGIS TPCGGGSSLI GFAIDCHAHP  60
LTLELNKTMM DALHGYQNNT LICELIHPPL ASFSISSPFP FSLFNNCELM VTSDGQWNSN  120
QKEKNDTIIK GQYWTPEEDR VLVEMVNQFG PTKWSQIAKA LQGRIGKQCR ERWNNQLRPN  180
IRRGTWSLEE DMILIKGHQE FGNKWSKIAK KLGGRTENAV KNHWNATMRR QNCKKNNHGH  240
YKGSMLHAYV KWVIASSPES AKKVPKKSSD NMNKKKKEVE RCNCDELVLF LS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-381282312104MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-3812123149158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-3812123149158MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-3813423130127MYB TRANSFORMING PROTEIN
1mse_C3e-381282312104C-Myb DNA-Binding Domain
1msf_C3e-381282312104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G011400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151013.10.0hypothetical protein PHAVU_004G011400g
TrEMBLV7BYE20.0V7BYE2_PHAVU; Uncharacterized protein
STRINGXP_007151013.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143361018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-48myb domain protein 98